Superfamily : 56719 [ Type II DNA topoisomerase C-terminal domain-like ]
Class : Multi-domain proteins (alpha and beta)
Fold : Type II DNA topoisomerase C-terminal domain-like
# of Members : 3
solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x
beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x
hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x
 
                             10        20        30        40        50  
d1bjta-  ( 419 )    rksrItnypkLedAnkAgtkeGykCTLVLTegdsAlslAvaGLavVgrdy
d3ilwa-  (  37 )                                                      
d3ku8a-  ( 363 )                                                      
                                                                      

                             60        70        80        90        100 
d1bjta-  ( 469 )    YGCypLrgkmlnvreLknaeiqAIkkIMgLqhrkkYedTksLrYGHLMIM
d3ilwa-  (  37 )                                                      
d3ku8a-  ( 363 )                                                      
                                                                      

                             110       120       130       140       150 
d1bjta-  ( 525 )    TdshIkglIinfLessFlgLldiqgFLLefitPiikVsItkptkntiafy
d3ilwa-  (  37 )                                                      
d3ku8a-  ( 363 )                                                      
                                                                      

                             160       170       180       190       200 
d1bjta-  ( 580 )    nmpdYekwReeeShkftWkqkyykGlgtslaqEVreYFsnLdrhlkifhs
d3ilwa-  (  37 )                                                      
d3ku8a-  ( 363 )                                                      
                                                                      

                             210       220       230       240       250 
d1bjta-  ( 630 )    lqwLrqyepfinkelilfslaDnirsIPnVLDGFkpgqRkVLyGCfkknl
d3ilwa-  (  37 )                          vgraLPeVrDGLkpvhrrVLyAMfdsgf
d3ku8a-  ( 363 )                                                      
                                                                      

                             260       270       280       290       300 
d1bjta-  ( 716 )    k---selkVaqLapyVsecTaYhhGeqSLaqtIiglAqnfVGsnNIYLLl
d3ilwa-  (  65 )    rpdrshakSarSvaeTmgnYhph-gdasIydSLVrMAqp--wslRYpLVd
d3ku8a-  ( 363 )                                                      
                                                                      

                             310       320       330       340       350 
d1bjta-  ( 763 )    pngaFGtratGGkdaaaaryIyTelNkLTrkIFhpaDdplYkyiqe-dek
d3ilwa-  ( 112 )    GqgnfGspGn--dppaamryTeArLtplAmeMLreIdeeTVdfipNydgr
d3ku8a-  ( 363 )                                                      
                                                                      

                             360       370       380       390       400 
d1bjta-  ( 812 )    tVEPewYLPILPMILVnGaegiGtgwsTyIPpFnPleIIkNIrhlMn--d
d3ilwa-  ( 160 )    vqePtVLPSRFPNLLAnGsgGiavgmaTNIPPHNLreLAdAVfwALenhd
d3ku8a-  ( 363 )                                                      
                                                                      

                             410       420       430       440       450 
d1bjta-  ( 860 )    e-------el--eqMhPwFRgWtGtieeie----------plrYrMyGrI
d3ilwa-  ( 210 )    adeeeTlaaVmgrVkGPDFPta-GlIvgs-qGtadAYktGrgsIrMrGvV
d3ku8a-  ( 363 )                                                      
                                                                      

                             460       470       480       490       500 
d1bjta-  ( 891 )    eqig----dnvLeItELPArtwtstIkeyLllGlsGndkikpWIkdMeeq
d3ilwa-  ( 258 )    eveedsrgrtsLVIteLPYqVnhdnFitsIaeqvr--dgkLagIsniedq
d3ku8a-  ( 363 )                                                      
                                                                      

                             510       520       530       540       550 
d1bjta-  ( 937 )    hdd--nIkFiItLspeeMakTrkigfyerFkLispIsLmnMVAfdphgki
d3ilwa-  ( 306 )    ssdrvglrIvIeIkrdavakvVinnLykhTqLqtsFgA-nMlAiVd-gvp
d3ku8a-  ( 363 )                                                      
                                                                      

                             560       570       580       590       600 
d1bjta-  ( 985 )    kkYnsVneILseFYyvRleyYqkRkdhmserlqwevekysfqvkFIkmii
d3ilwa-  ( 354 )    rtL-rLDqLIryYVdHQldVIvrRTtyrlrkAnerAhiLrGLvkALdald
d3ku8a-  ( 363 )         ttiflrardrAHiLeAlAVALAnidpIieliraptpaeAktaLva
                                aaaaaaaaaaaaaaa aaaaaaaa    aaaaaaa aa

                             610       620       630       640       650 
d1bjta-  (1035 )    ekeLtvt------nkp-rnaiiqeLenlg--FPrFnk----egkpyygsp
d3ilwa-  ( 403 )    eVialir------asetvdiAragLiell--dId----------------
d3ku8a-  ( 413 )    -------npwqlg-------nVaamleragddaArPewLepefgvrdglY
                                         aaaa                         

                             660       670       680       690       700 
d1bjta-  (1107 )    eelyGtYeyLlgmriwsltkeryqkllkqkqeketelenllklsakdiWn
d3ilwa-  ( 429 )    ---eiqAqaIldmqlrrlaalerqrIiddlakieaeiadled--ilakpe
d3ku8a-  ( 449 )    yLteqQAqaIldlrlqklt------------------------------g
                           aaaa   3333                               a

                             710       720     
d1bjta-  (1157 )    tdLkaFevgYqeFlqrDaearg     
d3ilwa-  ( 474 )    rqrgiVrdeLaeIvdrhGddrrTriia
d3ku8a-  ( 469 )    lehekLldeYklLdqIallilgsa--d
                    aaaaaaaaaa  aaaa           

 

 

Domain IDNameFamilySourceDomainSTRING-DB
DNA topoisomerase II, C-terminal fragment (residues 410-1202)Type II DNA topoisomerase C-terminal domain-likeBaker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]view
automated matchesautomated matchesMycobacterium tuberculosis [TaxId: 1773]view
automated matchesType II DNA topoisomerase C-terminal domain-likeEscherichia coli [TaxId: 83333]view

 

No outliers

Created with Raphaƫld3ku8a-d3ilwa-d1bjta-
FeatureDownload
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

 

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R K S R I T N Y P K L E D A N K A G T K E G Y K C T L V L T E G D S A L S L A V A G L A V V G R D Y Y G C Y P L R G K M L N V R E L K N A E I Q A I K K I M G L Q H R K K Y E D T K S L R Y G H L M I M T D S H I K G L I I N F L E S S F L G L L D I Q G F L L E F I T P I I K V S I T K P T K N T I A F Y N M P D Y E K W R E E E S H K F T W K Q K Y Y K G L G T S L A Q E V R E Y F S N L D R H L K I F H S L Q W L R Q Y E P F I N K E L I L F S L A D N I R S I P N V L D G F K P G Q R K V L Y G C F K K N L K - - - S E L K V A Q L A P Y V S E C T A Y H H G E Q S L A Q T I I G L A Q N F V G S N N I Y L L L P N G A F G T R A T G G K D A A A A R Y I Y T E L N K L T R K I F H P A D D P L Y K Y I Q E - D E K T V E P E W Y L P I L P M I L V N G A E G I G T G W S T Y I P P F N P L E I I K N I R H L M N - - D E - - - - - - - E L - - E Q M H P W F R G W T G T I E E I E - - - - - - - - - - P L R Y R M Y G R I E Q I G - - - - D N V L E I T E L P A R T W T S T I K E Y L L L G L S G N D K I K P W I K D M E E Q H D D - - N I K F I I T L S P E E M A K T R K I G F Y E R F K L I S P I S L M N M V A F D P H G K I K K Y N S V N E I L S E F Y Y V R L E Y Y Q K R K D H M S E R L Q W E V E K Y S F Q V K F I K M I I E K E L T V T - - - - - - N K P - R N A I I Q E L E N L G - - F P R F N K - - - - E G K P Y Y G S P E E L Y G T Y E Y L L G M R I W S L T K E R Y Q K L L K Q K Q E K E T E L E N L L K L S A K D I W N T D L K A F E V G Y Q E F L Q R D A E A R G - - - - -
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