BASE   PART 1   PART 2   PART 3   PART 4  
Superfamily : 56601 [ beta-lactamase/transpeptidase-like ]
Class : Multi-domain proteins (alpha and beta)
Fold : beta-lactamase/transpeptidase-like
# of Members : 3
Superposed Structure
solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x
beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x
hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x
 
                             10        20        30        40        50  
d2fffb1  ( 337 )    dylyfttlaeAqerMydyLAqrdnvsakelkneatqkfYrdlAakeieng
d2y5oa-  (   1 )                                                      
d3a3da1  (  28 )                                                      
                                                                      

                             60        70        80        90        100 
d2fffb1  ( 387 )    gYkitttIdqkIhsaMqsAVadyGylLddgtgrVeVGNVLMdNqtGaIlG
d2y5oa-  (   1 )           rlteLredIdaiLed--paLe----gAvsGVVVvdtatgeeLY
d3a3da1  (  28 )                 inVsdltq---kLpe----gSnAGViAkNinqnqiIA
                                   aaaa               bbbbbbbb     bbb

                             110       120       130       140       150 
d2fffb1  ( 437 )    FVGGRnyqenqnnHAfdtkrsPAsTTKPLLAYGIAIdqg-lMGsetILSN
d2y5oa-  (  38 )    srdGg------------eqLlPAsNMKLFTAAAALevLgadhsFgTeVAA
d3a3da1  (  58 )    dynGs------------tfMlPAsTQKVFTAVAAKlaLgdqfqFeTaLlS
                    bb                    333 aaaa aaaaaa         bbb 

                             160       170       180       190       200 
d2fffb1  ( 486 )    yptnfa--------------------------------------------
d2y5oa-  (  76 )    esaPgrrgevqdLYLvGrGDPtLsaedLdaMAaeVaasgVrtVrgdLyAD
d3a3da1  (  96 )    ngkiqngnLdgnLIVsFtGDPdLtrgqLyslLaeLkkqgIkkIngdLVLd
                                                                      

                             210       220       230       240       250 
d2fffb1  ( 492 )    --------------------------------------------------
d2y5oa-  ( 126 )    dtwFdserlVddWwpedePyaySAQISALTvAhgerfdTGVTeVsVt-pa
d3a3da1  ( 146 )    tsvFsshdrGlgWiwndltmçfNSpPAAANI----dn--NçFyAeLdAnk
                                                                      

                             260       270       280       290       300 
d2fffb1  ( 492 )    --------------------------------------------------
d2y5oa-  ( 175 )    aegepAdVdLgaAegyAeldnrAvTgaagsantLvIdRpv-gtntIaVtg
d3a3da1  ( 190 )    npgeiVkinvpaqf-pIqVfgqVyVAdsneapyçqldvvvhdnNrYqVkg
                                                                      

                             310       320       330       340       350 
d2fffb1  ( 492 )    --------------------------------ng-------npImyan--
d2y5oa-  ( 224 )    sLPadaapvtalrTVdePAaLAGhlFeeaLesngVtVkgdvglggvpadw
d3a3da1  ( 239 )    çlarqykpfglsfAVqnTdaYAAaIIqrQLrkLgIefngkvllpq---kp
                                                                      

                             360       370       380       390       400 
d2fffb1  ( 501 )    ----skGtgmMt-----LgeALnyswnIPAYwTYrmLren----------
d2y5oa-  ( 274 )    qdaevLAdhtSaeLseILvpFMKfsnnGHAEMLVKSIGqetag-aGtWda
d3a3da1  ( 286 )    qqGqlLakhlSkpLpdLLkkMMkksdnqIADSLFRaVAfnyykrpAsFql
                             b       aaaaaa    aaaaaaaaaaaa           

                             410       420       430       440       450 
d2fffb1  ( 532 )    -gvdVkgyMekMgYeIpeygiesLPmGg-gIeVtVAqHTNGYQTLAnnGv
d2y5oa-  ( 323 )    GlvgVeeaLsglgVdTagLvlnDGSGlSrgNlVTAdtVvdLLgqAgs---
d3a3da1  ( 336 )    GtlAVksILqkqgIrFgnSiLaDGSGlSrhNlVAPktMLsVLeyIAk---
                        aaaaaaa                       aaaaaaaaaaaa    

                             460       470       480       490       500 
d2fffb1  ( 580 )    yhqkHVIskIeaadgrvvyeyqdkpvqVYskATATIMQglLreVLss-rv
d2y5oa-  ( 370 )    ------------------------------ApwaqtWsaSLPvAGesdpf
d3a3da1  ( 383 )    ------------------------------nedkLhLmeTFPiAgv----
                                                     aa               

                             510       520       530       540       550 
d2fffb1  ( 629 )    tTtFksnLtslnptlAnadWIGKTGttnqdeNMWLMLSTp-----rLTLG
d2y5oa-  ( 390 )    vGGtLanr--MrgtAAegvVeAKtgtms--gVSALSGYVpGpe-geLAFS
d3a3da1  ( 399 )    -dgtIsgrgGLisppLvknViAKtGslk--gVyNLAGFMtNargekVAFV
                                        bbbbbb     bbbbbbb        bbbb

                             560       570       580       590       600 
d2fffb1  ( 674 )    GWIGhddnhsLsrrAgysnNSnYMAhLVnaIqqaspsiWgnerFaldpsV
d2y5oa-  ( 435 )    IVNngHsg-----paPlaVQdaIAvrLAeyAghqape             
d3a3da1  ( 446 )    QFIngYstgdlesktkrapLvqFErnLYneLyky                
                    bbbb              aaaaaaaaaaaaa                   

                             610       620       630       640       650 
d2fffb1  ( 724 )    vkSeVLksTGqkpgkvsvegkeveVtgstvtSyWAnksGApaTsyrFAiG
d2y5oa-                                                               
d3a3da1                                                               
                                                                      

                             660    
d2fffb1  ( 774 )    GsdadYqnaWssivgs
d2y5oa-                             
d3a3da1
 

 

Domain IDNameFamilySourceDomainSTRING-DB
Penicillin-binding protein 1b, transpeptidase domainbeta-Lactamase/D-ala carboxypeptidasePneumococcus (Streptococcus pneumoniae) [TaxId: 1313]view
D-alanyl-D-alanine carboxypeptidase DacDac-likeActinomadura sp. [TaxId: 1989]view
DD-carboxypeptidase DacBDac-likeHaemophilus influenzae [TaxId: 727]view

 

No outliers

Created with Raphaëld2fffb1d3a3da1d2y5oa-
FeatureDownload
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

 

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Contact: Prof. R. Sowdhamini - mini@ncbs.res.in