PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d4fvya-  ( 299 )    rflkVkNwetdvvltDtLhlkstletgctehicmgsimlptkdqlfplAk
d4uqra-  (   2 )                                           eekeilwneAk
                                                             aaaaaaaaa

                             60        70        80        90        100 
d4fvya-  ( 360 )    eFLdqyyssikrfgskaHmdrleeVnkeIeststYqLkdtELiyGAkhAw
d4uqra-  (  13 )    aFIaaCYqelgka--aevkdrladIkseIdltgsYvHtkeELehGAkMAw
                    aaaaaaaaa        aaaaaaaaaaaaaaa      aaaaaaaaaaaa

                             110       120       130       140       150 
d4fvya-  ( 410 )    rNasrcvgRiqwskLqVfdArdCttAhgMfnyIcnHVkyAtnkGnLrSAI
d4uqra-  (  61 )    rnsNrcigRLfwnsLnVidrrdVrtkeeVrdALfhHIetAtnnGkIrpTI
                    a       333    bbbb      aaaaaaaaaaaaaaaa333    bb

                             160       170       180       190       200 
d4fvya-  ( 460 )    TIFpQrtdgkhdFRVWNsqLIrYAGYkqpdgstlGDpaNvqfTeiCiqqg
d4uqra-  ( 111 )    TIFppeekgekqVeIwNhqLIrYAGyes-dgeriGDpascsLTaaCeelg
                    bb           bb         bbb     bbb 333aaaaaaaaa  

                             210       220       230       240       250 
d4fvya-  ( 510 )    wkAprgrFdvLPLLLQAngn-dPelfqIppelVleVpIrHpkfdwFkdlg
d4uqra-  ( 160 )    WrGertdfdLLPLIFrmkgdeqPvwyeLprslVieVpItHpdieaFsdle
                                bbbb       bbb   333  bbb        3333 

                             260       270       280       290       300 
d4fvya-  ( 559 )    LkWYGLpAvSnmlLeIGGLeFSACPfSgwYmGTeIGvrdYCdnsrYnIle
d4uqra-  ( 210 )    LkWYGVpIiSdmkLeVGGihYNAAPfNgwYmGTeIGArnLAdekrYdklk
                     bbb        bbbb  bbb    bb    aaaaa            aa

                             310       320       330       340       350 
d4fvya-  ( 609 )    eVAkkmdldmrktsslwkdqAlveINiAVlySFqsdkVtIvdhhsaTesF
d4uqra-  ( 260 )    kVAsvIgiaadyntdlwkdqAlveLNkAVlhSYkkqgVsIvdhhtAAsqF
                    aaaaa       333 aaaaaaaaaaaaaaaaaaa       aaaaaaaa

                             360       370       380       390       400 
d4fvya-  ( 659 )    ikHMenEYrcrgGCPAdwvwIvPpmsgsiTpVfhQeMlnyrLtPsfeyQp
d4uqra-  ( 310 )    krFeeqAeeagrklTGdwtwLiPpispaaThIfhrsYdnsivkPNYfyqd
                    aaaaaaaaa        aaaa     333 3333          bbb   

                            
d4fvya-  ( 709 )    dPwnthvw
d4uqra-  ( 360 )    kpye

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d4fvya- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4fvya- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Nitric oxide (NO) synthase oxygenase domain	Nitric oxide (NO) synthase oxygenase domain	Norway rat (Rattus norvegicus) [TaxId: 10116]		view
d4uqra- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4uqra- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	Nitric oxide (NO) synthase oxygenase domain	Bacillus subtilis [TaxId: 224308]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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