Superfamily : 56420 [ Peptide deformylase ]
Class : Alpha and beta proteins (a+b)
Fold : Peptide deformylase
# of Members : 12
Superposed Structure
solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x
beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x
hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x
 
                             10        20        30        40        50  
d1rl4a-  (  66 )                    kIvkypdpiLrrrSeeVt-----nfddnLkrvVr
d1v3ya-  (   1 )                mvy-pirlygdpvLrrkArpVe-----dfs-gIkrlAe
d1ws0a-  (   1 )               mavl-eiikhpnevLetpCerVi-----nfdkkLvklLk
d1xeoa-  (   1 )                svl-qVlhIpderLrkvAkpVe-----eVnaeIqriVd
d2os0a1  (   1 )               mitmkdIiregnptLravAeeVpv----pIteeDrqlGe
d3e3ua-  (   2 )                avv-pIrivgdpvLhtaTtpVtvaadgslpadlaqlia
d3g5ka1  (   6 )                f-s-hvCqvgdpvLrgvAapVe--raqLggpeLqrlTq
d3ocaa-  (   2 )                svl-sivtVpd-rLslcSeeVe------Vdqsir-lVd
d4dr8a-  (   3 )    aavairVakklappl-dlhyLgdrvLrqpAkrVs-----riddeLRqtIr
d4je6a1  (   2 )                dlp-eivasgdpvLhekAreVd--pgeIgs-rIqkiId
d5hgwa1  (   1 )                mir-eilkmgdprLlevAkpva-----fdtpeLheiVa
d6jf8a-  (   2 )               svvl-pVAkrgediLkliAapVsan--elnsnwLyqlAd
                                           333                  aaaaaa

                             60        70        80        90        100 
d1rl4a-  (  95 )    kMfdiMyes------------kgiGLSAPQVniskRIIVwn---------
d1v3ya-  (  32 )    dMleTMfea------------kgvGLAAPQIGlsqrLFVAVelr------
d1ws0a-  (  34 )    DMheTMlia------------dgvGLAAPQVgvslqVAVVdvdd------
d1xeoa-  (  33 )    dMFeTMyae------------egiGLAATQVdihqrIIVIDvse------
d2os0a1  (  36 )    dMltFLknSqdpvkaeelqLrgdvGLAAPQLdiskrIIAVhVp-------
d3e3ua-  (  39 )    tMydTMdaA------------ngvGLAANQIGcslrLFVYdCa-----ad
d3g5ka1  (  40 )    rLvqvMrrr------------rcvGLSAPQLgvprqVLALeLp-ealCre
d3ocaa-  (  34 )    dMf-TMhan-------------glGLAAVQVgvhkrILVMnvpe------
d4dr8a-  (  49 )    qMLqTMySa------------dgiGLAAPQVginkqLIVIdlle------
d4je6a1  (  37 )    dMikVMrla------------pcvGLAAPQIgvplrIIVLeDt-keyisy
d5hgwa1  (  34 )    dMfeTMhha------------nGaGLAAPQIgiglqIIIFGfgsnnryp-
d6jf8a-  (  38 )    aMhaTMle------------rnGvGIAAPQVyiskrVIIVASr-------
                    aaaaaaaa                bbb3333     bbbb          

                             110       120       130       140       150 
d1rl4a-  ( 135 )    ----------------riFInPsiveqsl--vklkl---iegClSFp-gI
d1v3ya-  (  76 )    ------elvr----rvyvVAnPvityre---glve---gteg-lSLp-gl
d1ws0a-  (  66 )    ------d--t----gkieLINPsilekr---geqv---gpegclSfp-gl
d1xeoa-  (  65 )    --nrd---------erlVLInPelleks---getGi---eegClSIp-eq
d2os0a1  (  88 )    -------------slstVMYNPkilshsv--qdVClge-gegCLSVdrdv
d3e3ua-  (  72 )    ram------tAr--rrgVVInPvletseipetmpdpdtddegClSVp-ge
d3g5ka1  (  77 )    cpprqralrqmepfplrvFVnPslrvld--srlvt---fpegCeSva-gf
d3ocaa-  (  74 )    --eEdkiegyelygGpyCIInPkivdisq--ekvkl---kegClSVp-gy
d4dr8a-  (  82 )    ----------deqapplVLInPkiertag--dleqc---qegclSIp-gV
d4je6a1  (  74 )    ap-eeilaqer-hfdlmVMVnPvlkers--nkkal---ffegCeSvd-gf
d5hgwa1  (  71 )    ---------dAppVpeTvLInPkLeymp--pdmee---gwEGClSVp-gm
d6jf8a-  (  69 )    ---pnprypdApemnavvMVnPeIlefss--ecg-----eeGClSVp-de
                                    bbbbbbbbbb       bb    bb         

                             160       170       180       190       200 
d1rl4a-  ( 163 )    eg-kVeRpsiVsIsyydingykhlkilkgihSriFqhEfdHLnGtLFIdk
d1v3ya-  ( 109 )    yseeVpRAerIrVeyqdeegrgrvlelegymArvFQhEidHLdGiLFFer
d1ws0a-  (  97 )    yG-eVeRadyIkVrAqnrrgkvflleAegflARaIQhEidHLhGvLFtsk
d1xeoa-  (  97 )    ra-lVpRaekVkIrAldrdgkpfeleAdgllAIcIqhEmdHLvGkLFMdy
d2os0a1  ( 122 )    pG-yVvRhNkItVSyfdmaGekhkvrlknyeAIVVqhEidHInGiMFydh
d3e3ua-  ( 113 )    sf-pTgRAkwArVtgldadGspvsIegtglFArMLQhETGHLdGfLYldr
d3g5ka1  ( 121 )    lA-cVpRfqaVqIsgldpnGeqvvwqasgwaARIIQhEmdHLqGcLFidk
d3ocaa-  ( 118 )    fd-yIvrpqrIaVqyldyngneciIkAQGwLARcLqhEidHLnGtvFLky
d4dr8a-  ( 116 )    yL-dVeRpeiVeVsykdengp--qlvadgllArcIqhEmdHLnGvLFVDr
d4je6a1  ( 118 )    rA-AVeRyleVvVtgydrqgkrievnAsGwqARILqhEcdHLdGnLYvdk
d5hgwa1  ( 106 )    RG-VVsRyakVrYsgydqfgakidrvAegfhArVVQhEyDHLiGkLYpmr
d6jf8a-  ( 110 )    rg-qVerae-VkVkyltlqG--vetvfqgfpAi-VQhEvdHLnGilFver
                     b b  b  bbbbbbb     bbbbbb aaaaaaaaaaaaaa    333 

                             210       220       230       240 
d1rl4a-  ( 212 )    Mt--------qvdkkkVrpkLnelird              
d1v3ya-  ( 159 )    Lp--kpk---reafleanraeLvrFqkea            
d1ws0a-  ( 146 )    Vtryye                                   
d1xeoa-  ( 146 )    ls---------------plkqqrirqkV--ekldrlk    
d2os0a1  ( 171 )    In--------kenpfalk----------------egVlvie
d3e3ua-  ( 162 )    L-i-gry---arnAkravkshgwgvpglswlPgedpdpfgh
d3g5ka1  ( 170 )    m-d-srtftnvywmkvnd                       
d3ocaa-  ( 167 )    ls---------------kfkrdfAiekV--eli        
d4dr8a-  ( 165 )    Vn---------------rlelneaLdkk--gfavqavrpva
d4je6a1  ( 167 )    m-v-prTfrtvdnldlplae----------------gCplg
d5hgwa1  ( 155 )    Itd-ftrfgftevlfp-----------------------gl
d6jf8a-  ( 159 )    is
 

 

Domain IDNameFamilySourceDomainSTRING-DB
Peptide deformylasePeptide deformylaseMalaria parasite (Plasmodium falciparum) [TaxId: 5833]view
Peptide deformylasePeptide deformylaseThermus thermophilus [TaxId: 274]view
automated matchesautomated matchesBacillus cereus [TaxId: 1396]view
Peptide deformylasePeptide deformylaseEscherichia coli [TaxId: 562]view
Peptide deformylasePeptide deformylaseEnterococcus faecalis [TaxId: 1351]view
automated matchesautomated matchesMycobacterium tuberculosis [TaxId: 1773]view
automated matchesautomated matchesHuman (Homo sapiens) [TaxId: 9606]view
automated matchesautomated matchesEhrlichia chaffeensis [TaxId: 205920]view
automated matchesautomated matchesSynechococcus elongatus [TaxId: 269084]view
automated matchesautomated matchesThale cress (Arabidopsis thaliana) [TaxId: 3702]view
automated matchesautomated matchesBurkholderia ambifaria [TaxId: 398577]view
automated matchesautomated matchesAcinetobacter baumannii [TaxId: 470]view

 

No outliers

FeatureDownload
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

 

10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240
- - - - - - - - - - - - - - - - K I V K Y P D P I L R R R S E E V T - - - - - N F D D N L K R V V R K M F D I M Y E S - - - - - - - - - - - - K G I G L S A P Q V N I S K R I I V W N - - - - - - - - - - - - - - - - - - - - - - - - - R I F I N P S I V E Q S L - - V K L K L - - - I E G C L S F P - G I E G - K V E R P S I V S I S Y Y D I N G Y K H L K I L K G I H S R I F Q H E F D H L N G T L F I D K M T - - - - - - - - Q V D K K K V R P K L N E L I R D - - - - - - - - - - - - - -
- - - - - - - - - - - - M V Y - P I R L Y G D P V L R R K A R P V E - - - - - D F S - G I K R L A E D M L E T M F E A - - - - - - - - - - - - K G V G L A A P Q I G L S Q R L F V A V E L R - - - - - - - - - - - - E L V R - - - - R V Y V V A N P V I T Y R E - - - G L V E - - - G T E G - L S L P - G L Y S E E V P R A E R I R V E Y Q D E E G R G R V L E L E G Y M A R V F Q H E I D H L D G I L F F E R L P - - K P K - - - R E A F L E A N R A E L V R F Q K E A - - - - - - - - - - - -
- - - - - - - - - - - M A V L - E I I K H P N E V L E T P C E R V I - - - - - N F D K K L V K L L K D M H E T M L I A - - - - - - - - - - - - D G V G L A A P Q V G V S L Q V A V V D V D D - - - - - - - - - - - - D - - T - - - - G K I E L I N P S I L E K R - - - G E Q V - - - G P E G C L S F P - G L Y G - E V E R A D Y I K V R A Q N R R G K V F L L E A E G F L A R A I Q H E I D H L H G V L F T S K V T R Y Y E - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - S V L - Q V L H I P D E R L R K V A K P V E - - - - - E V N A E I Q R I V D D M F E T M Y A E - - - - - - - - - - - - E G I G L A A T Q V D I H Q R I I V I D V S E - - - - - - - - N R D - - - - - - - - - E R L V L I N P E L L E K S - - - G E T G I - - - E E G C L S I P - E Q R A - L V P R A E K V K I R A L D R D G K P F E L E A D G L L A I C I Q H E M D H L V G K L F M D Y L S - - - - - - - - - - - - - - - P L K Q Q R I R Q K V - - E K L D R L K - - - -
- - - - - - - - - - - M I T M K D I I R E G N P T L R A V A E E V P V - - - - P I T E E D R Q L G E D M L T F L K N S Q D P V K A E E L Q L R G D V G L A A P Q L D I S K R I I A V H V P - - - - - - - - - - - - - - - - - - - - S L S T V M Y N P K I L S H S V - - Q D V C L G E - G E G C L S V D R D V P G - Y V V R H N K I T V S Y F D M A G E K H K V R L K N Y E A I V V Q H E I D H I N G I M F Y D H I N - - - - - - - - K E N P F A L K - - - - - - - - - - - - - - - - E G V L V I E
- - - - - - - - - - - - A V V - P I R I V G D P V L H T A T T P V T V A A D G S L P A D L A Q L I A T M Y D T M D A A - - - - - - - - - - - - N G V G L A A N Q I G C S L R L F V Y D C A - - - - - A D R A M - - - - - - T A R - - R R G V V I N P V L E T S E I P E T M P D P D T D D E G C L S V P - G E S F - P T G R A K W A R V T G L D A D G S P V S I E G T G L F A R M L Q H E T G H L D G F L Y L D R L - I - G R Y - - - A R N A K R A V K S H G W G V P G L S W L P G E D P D P F G H
- - - - - - - - - - - - F - S - H V C Q V G D P V L R G V A A P V E - - R A Q L G G P E L Q R L T Q R L V Q V M R R R - - - - - - - - - - - - R C V G L S A P Q L G V P R Q V L A L E L P - E A L C R E C P P R Q R A L R Q M E P F P L R V F V N P S L R V L D - - S R L V T - - - F P E G C E S V A - G F L A - C V P R F Q A V Q I S G L D P N G E Q V V W Q A S G W A A R I I Q H E M D H L Q G C L F I D K M - D - S R T F T N V Y W M K V N D - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - S V L - S I V T V P D - R L S L C S E E V E - - - - - - V D Q S I R - L V D D M F - T M H A N - - - - - - - - - - - - - G L G L A A V Q V G V H K R I L V M N V P E - - - - - - - - E E D K I E G Y E L Y G G P Y C I I N P K I V D I S Q - - E K V K L - - - K E G C L S V P - G Y F D - Y I V R P Q R I A V Q Y L D Y N G N E C I I K A Q G W L A R C L Q H E I D H L N G T V F L K Y L S - - - - - - - - - - - - - - - K F K R D F A I E K V - - E L I - - - - - - - -
A A V A I R V A K K L A P P L - D L H Y L G D R V L R Q P A K R V S - - - - - R I D D E L R Q T I R Q M L Q T M Y S A - - - - - - - - - - - - D G I G L A A P Q V G I N K Q L I V I D L L E - - - - - - - - - - - - - - - - D E Q A P P L V L I N P K I E R T A G - - D L E Q C - - - Q E G C L S I P - G V Y L - D V E R P E I V E V S Y K D E N G P - - Q L V A D G L L A R C I Q H E M D H L N G V L F V D R V N - - - - - - - - - - - - - - - R L E L N E A L D K K - - G F A V Q A V R P V A
- - - - - - - - - - - - D L P - E I V A S G D P V L H E K A R E V D - - P G E I G S - R I Q K I I D D M I K V M R L A - - - - - - - - - - - - P C V G L A A P Q I G V P L R I I V L E D T - K E Y I S Y A P - E E I L A Q E R - H F D L M V M V N P V L K E R S - - N K K A L - - - F F E G C E S V D - G F R A - A V E R Y L E V V V T G Y D R Q G K R I E V N A S G W Q A R I L Q H E C D H L D G N L Y V D K M - V - P R T F R T V D N L D L P L A E - - - - - - - - - - - - - - - - G C P L G
- - - - - - - - - - - - M I R - E I L K M G D P R L L E V A K P V A - - - - - F D T P E L H E I V A D M F E T M H H A - - - - - - - - - - - - N G A G L A A P Q I G I G L Q I I I F G F G S N N R Y P - - - - - - - - - - D A P P V P E T V L I N P K L E Y M P - - P D M E E - - - G W E G C L S V P - G M R G - V V S R Y A K V R Y S G Y D Q F G A K I D R V A E G F H A R V V Q H E Y D H L I G K L Y P M R I T D - F T R F G F T E V L F P - - - - - - - - - - - - - - - - - - - - - - - G L
- - - - - - - - - - - S V V L - P V A K R G E D I L K L I A A P V S A N - - E L N S N W L Y Q L A D A M H A T M L E - - - - - - - - - - - - R N G V G I A A P Q V Y I S K R V I I V A S R - - - - - - - - - - P N P R Y P D A P E M N A V V M V N P E I L E F S S - - E C G - - - - - E E G C L S V P - D E R G - Q V E R A E - V K V K Y L T L Q G - - V E T V F Q G F P A I - V Q H E V D H L N G I L F V E R I S - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

 

 

 

 

 

Member Chain UniProtKB GO term
d1rl4a_ A Q8I372 GO:0042586
d1rl4a_ A Q8I372 GO:0042586
d1v3ya_ A P43522 GO:0006412
d1v3ya_ A P43522 GO:0016787
d1v3ya_ A P43522 GO:0018206
d1v3ya_ A P43522 GO:0042586
d1v3ya_ A P43522 GO:0046872
d1v3ya_ A P43522 GO:0006412
d1v3ya_ A P43522 GO:0016787
d1v3ya_ A P43522 GO:0018206
d1v3ya_ A P43522 GO:0042586
d1v3ya_ A P43522 GO:0046872
 
Contact: Prof. R. Sowdhamini - mini@ncbs.res.in