PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1vz6a-  (   8 )                          tPrGFVVhTapVgLad---------grd
d3ndva-  (   1 )    gprArdlgVpFegtpgalnAITdVagVeVghttvisgdgamvigkGPyRT
                                               bbbbb                  

                             60        70        80        90        100 
d1vz6a-  (  28 )    DFTVLASt-----apAtVSAVFTrsrfagpsVvlCreAvadgqArGVVVL
d3ndva-  (  51 )    GVTIIHPlgktsldGVAAGravingtgeWtgMhlVde---vgqFlgPIAL
                     bbbbb          bbbbbb         aaaaaa          bbb

                             110       120       130       140       150 
d1vz6a-  (  73 )    ArnANVaTgleGeeNAreVraVaaL---gLpegeMLIASTgv---igqYp
d3ndva-  (  98 )    TG-tgnv--glVhqSMmdWSvgkVpeealfsrllPVVAeTlDnrLNDvfG
                    bb       aaaaaaaaaa            3   bbbbb          

                             160       170       180       190       200 
d1vz6a-  ( 120 )    msIrhLtLwpa----geggFrAAr-AImttDt--------pKevvvg---
d3ndva-  ( 145 )    hgLtrdhVfaALdgAkggpVaEGnvGGGTGMiAYtFKGGIGTSSRvvsAg
                                                             bbb      

                             210       220       230       240       250 
d1vz6a-  ( 162 )    --gAtLvGIAKGVGmL--ePdMa---------------------------
d3ndva-  ( 195 )    dtrytVGVLVQAnHgdRndLrIagvqIGkeIkgawpevngivaagpdagk
                         bbbbbb                                       

                             260       270       280       290       300 
d1vz6a-  ( 181 )    -TLLTFFATDArLdpaeQdrLFrrVMdrTFnAVSIdtdtStSDTAVLFAN
d3ndva-  ( 245 )    psLLIVIATdAPLmphQLerMAr-rAalGVgrNgStagalsGEfALAFST
                       bbbbbb     aaaaaaaaa  aaa               bbbbbbb

                             310       320       330       340       350 
d1vz6a-  ( 230 )    glagvd-----------------ageFe-aLhtAAlaLVkdIAsdGegAa
d3ndva-  ( 298 )    shViplggkprlpaiindtdsetMnALfrGVvqATeEALVNQLVaSetmt
                    bbbb                   aaaa   aaaaaaaaaaaaaa      

                             360       370       380       390       400 
d1vz6a-  ( 264 )    kLIeVqVtgArddaQAkrVGktVVnSplVktaVhgcdpnwgrVamAIgkc
d3ndva-  ( 348 )    GAnnakVygIp-hdqLarIMkarfp                         
                        bbb     aaaaaaaaaaa                           

                             410       420       430       440       450 
d1vz6a-  ( 314 )    sdDtdidqerVtIrFgevevyppalaavaehLrgdeVvIGIdLaiagaft
d3ndva-                                                               
                                                                      

                             460  
d1vz6a-  ( 375 )    VYGCDltegyvrln
d3ndva-

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1vz6a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1vz6a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Glutamate N-acetyltransferase 2 (ornithine acetyltransferase)	ArgJ-like	Streptomyces clavuligerus [TaxId: 1901]		view
d3ndva- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3ndva- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Sphingosinicella xenopeptidilytica [TaxId: 364098]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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G	P	R	A	R	D	L	G	V	P	F	E	G	T	P	G	A	L	N	A	I	T	D	V	A	G	V	E	V	G	H	T	T	V	I	S	G	D	G	A	M	V	I	G	K	G	P	Y	R	T	G	V	T	I	I	H	P	L	G	K	T	S	L	D	G	V	A	A	G	R	A	V	I	N	G	T	G	E	W	T	G	M	H	L	V	D	E	-	-	-	V	G	Q	F	L	G	P	I	A	L	T	G	-	T	G	N	V	-	-	G	L	V	H	Q	S	M	M	D	W	S	V	G	K	V	P	E	E	A	L	F	S	R	L	L	P	V	V	A	E	T	L	D	N	R	L	N	D	V	F	G	H	G	L	T	R	D	H	V	F	A	A	L	D	G	A	K	G	G	P	V	A	E	G	N	V	G	G	G	T	G	M	I	A	Y	T	F	K	G	G	I	G	T	S	S	R	V	V	S	A	G	D	T	R	Y	T	V	G	V	L	V	Q	A	N	H	G	D	R	N	D	L	R	I	A	G	V	Q	I	G	K	E	I	K	G	A	W	P	E	V	N	G	I	V	A	A	G	P	D	A	G	K	P	S	L	L	I	V	I	A	T	D	A	P	L	M	P	H	Q	L	E	R	M	A	R	-	R	A	A	L	G	V	G	R	N	G	S	T	A	G	A	L	S	G	E	F	A	L	A	F	S	T	S	H	V	I	P	L	G	G	K	P	R	L	P	A	I	I	N	D	T	D	S	E	T	M	N	A	L	F	R	G	V	V	Q	A	T	E	E	A	L	V	N	Q	L	V	A	S	E	T	M	T	G	A	N	N	A	K	V	Y	G	I	P	-	H	D	Q	L	A	R	I	M	K	A	R	F	P	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

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Member	Chain	UniProtKB	GO term
d1vz6a_	A	P0DJQ5	GO:0004042
d1vz6a_	A	P0DJQ5	GO:0004358
d1vz6a_	A	P0DJQ5	GO:0005737
d1vz6a_	A	P0DJQ5	GO:0006526
d1vz6a_	A	P0DJQ5	GO:0006592
d1vz6a_	A	P0DJQ5	GO:0016746
d1vz6a_	A	P0DJQ5	GO:0033050

Showing 1 to 7 of 7 entries

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G	P	R	A	R	D	L	G	V	P	F	E	G	T	P	G	A	L	N	A	I	T	D	V	A	G	V	E	V	G	H	T	T	V	I	S	G	D	G	A	M	V	I	G	K	G	P	Y	R	T	G	V	T	I	I	H	P	L	G	K	T	S	L	D	G	V	A	A	G	R	A	V	I	N	G	T	G	E	W	T	G	M	H	L	V	D	E	-	-	-	V	G	Q	F	L	G	P	I	A	L	T	G	-	T	G	N	V	-	-	G	L	V	H	Q	S	M	M	D	W	S	V	G	K	V	P	E	E	A	L	F	S	R	L	L	P	V	V	A	E	T	L	D	N	R	L	N	D	V	F	G	H	G	L	T	R	D	H	V	F	A	A	L	D	G	A	K	G	G	P	V	A	E	G	N	V	G	G	G	T	G	M	I	A	Y	T	F	K	G	G	I	G	T	S	S	R	V	V	S	A	G	D	T	R	Y	T	V	G	V	L	V	Q	A	N	H	G	D	R	N	D	L	R	I	A	G	V	Q	I	G	K	E	I	K	G	A	W	P	E	V	N	G	I	V	A	A	G	P	D	A	G	K	P	S	L	L	I	V	I	A	T	D	A	P	L	M	P	H	Q	L	E	R	M	A	R	-	R	A	A	L	G	V	G	R	N	G	S	T	A	G	A	L	S	G	E	F	A	L	A	F	S	T	S	H	V	I	P	L	G	G	K	P	R	L	P	A	I	I	N	D	T	D	S	E	T	M	N	A	L	F	R	G	V	V	Q	A	T	E	E	A	L	V	N	Q	L	V	A	S	E	T	M	T	G	A	N	N	A	K	V	Y	G	I	P	-	H	D	Q	L	A	R	I	M	K	A	R	F	P	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

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-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	T	P	R	G	F	V	V	H	T	A	P	V	G	L	A	D	-	-	-	-	-	-	-	-	-	G	R	D	D	F	T	V	L	A	S	T	-	-	-	-	-	A	P	A	T	V	S	A	V	F	T	R	S	R	F	A	G	P	S	V	V	L	C	R	E	A	V	A	D	G	Q	A	R	G	V	V	V	L	A	R	N	A	N	V	A	T	G	L	E	G	E	E	N	A	R	E	V	R	A	V	A	A	L	-	-	-	G	L	P	E	G	E	M	L	I	A	S	T	G	V	-	-	-	I	G	Q	Y	P	M	S	I	R	H	L	T	L	W	P	A	-	-	-	-	G	E	G	G	F	R	A	A	R	-	A	I	M	T	T	D	T	-	-	-	-	-	-	-	-	P	K	E	V	V	V	G	-	-	-	-	-	G	A	T	L	V	G	I	A	K	G	V	G	M	L	-	-	E	P	D	M	A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	T	L	L	T	F	F	A	T	D	A	R	L	D	P	A	E	Q	D	R	L	F	R	R	V	M	D	R	T	F	N	A	V	S	I	D	T	D	T	S	T	S	D	T	A	V	L	F	A	N	G	L	A	G	V	D	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	A	G	E	F	E	-	A	L	H	T	A	A	L	A	L	V	K	D	I	A	S	D	G	E	G	A	A	K	L	I	E	V	Q	V	T	G	A	R	D	D	A	Q	A	K	R	V	G	K	T	V	V	N	S	P	L	V	K	T	A	V	H	G	C	D	P	N	W	G	R	V	A	M	A	I	G	K	C	S	D	D	T	D	I	D	Q	E	R	V	T	I	R	F	G	E	V	E	V	Y	P	P	A	L	A	A	V	A	E	H	L	R	G	D	E	V	V	I	G	I	D	L	A	I	A	G	A	F	T	V	Y	G	C	D	L	T	E	G	Y	V	R	L	N
G	P	R	A	R	D	L	G	V	P	F	E	G	T	P	G	A	L	N	A	I	T	D	V	A	G	V	E	V	G	H	T	T	V	I	S	G	D	G	A	M	V	I	G	K	G	P	Y	R	T	G	V	T	I	I	H	P	L	G	K	T	S	L	D	G	V	A	A	G	R	A	V	I	N	G	T	G	E	W	T	G	M	H	L	V	D	E	-	-	-	V	G	Q	F	L	G	P	I	A	L	T	G	-	T	G	N	V	-	-	G	L	V	H	Q	S	M	M	D	W	S	V	G	K	V	P	E	E	A	L	F	S	R	L	L	P	V	V	A	E	T	L	D	N	R	L	N	D	V	F	G	H	G	L	T	R	D	H	V	F	A	A	L	D	G	A	K	G	G	P	V	A	E	G	N	V	G	G	G	T	G	M	I	A	Y	T	F	K	G	G	I	G	T	S	S	R	V	V	S	A	G	D	T	R	Y	T	V	G	V	L	V	Q	A	N	H	G	D	R	N	D	L	R	I	A	G	V	Q	I	G	K	E	I	K	G	A	W	P	E	V	N	G	I	V	A	A	G	P	D	A	G	K	P	S	L	L	I	V	I	A	T	D	A	P	L	M	P	H	Q	L	E	R	M	A	R	-	R	A	A	L	G	V	G	R	N	G	S	T	A	G	A	L	S	G	E	F	A	L	A	F	S	T	S	H	V	I	P	L	G	G	K	P	R	L	P	A	I	I	N	D	T	D	S	E	T	M	N	A	L	F	R	G	V	V	Q	A	T	E	E	A	L	V	N	Q	L	V	A	S	E	T	M	T	G	A	N	N	A	K	V	Y	G	I	P	-	H	D	Q	L	A	R	I	M	K	A	R	F	P	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

									10										20										30										40										50										60										70										80										90										100										110										120										130										140										150										160										170										180										190										200										210										220										230										240										250										260										270										280										290										300										310										320										330										340										350										360										370										380										390										400										410										420										430										440										450										460
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