PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1hska2  ( 209 )    gkmteiqakmddlterreskqPl--eypscgsVFqrpp------------
d1uxya2  ( 201 )       vtpqqvfnavchmrttklpdpkvngnagaFFknpvvsaetAkaLlsq
                         aaaaaaaaaaaaaaa        bb                    

                             60        70        80        90        100 
d1hska2  ( 245 )    --------------ghfagkLIqdSnLqghrigGVeVStkhAgfMVnvdn
d1uxya2  ( 248 )    fptApnypqadgsvkLaAgwLIdqcqLkGmqiggAAVhrqqAlVLinedn
                                     aaaaaaa      bb  bbb       bbb   

                             110       120       130       140   
d1hska2  ( 281 )    GtatdyenLIhyVqktVkekfgieLnrevriig--------ehpk
d1uxya2  ( 298 )    AksedvvqLAhhVrqkVGekFnVwLePevrfigasgevsavetIs
                      aaaaaaaaaaaaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1hska2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1hska2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain	Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain	Staphylococcus aureus [TaxId: 1280]		view
d1uxya2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1uxya2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain	Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain	Escherichia coli [TaxId: 562]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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G	K	M	T	E	I	Q	A	K	M	D	D	L	T	E	R	R	E	S	K	Q	P	L	-	-	E	Y	P	S	C	G	S	V	F	Q	R	P	P	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	G	H	F	A	G	K	L	I	Q	D	S	N	L	Q	G	H	R	I	G	G	V	E	V	S	T	K	H	A	G	F	M	V	N	V	D	N	G	T	A	T	D	Y	E	N	L	I	H	Y	V	Q	K	T	V	K	E	K	F	G	I	E	L	N	R	E	V	R	I	I	G	-	-	-	-	-	-	-	-	E	H	P	K
-	-	-	V	T	P	Q	Q	V	F	N	A	V	C	H	M	R	T	T	K	L	P	D	P	K	V	N	G	N	A	G	A	F	F	K	N	P	V	V	S	A	E	T	A	K	A	L	L	S	Q	F	P	T	A	P	N	Y	P	Q	A	D	G	S	V	K	L	A	A	G	W	L	I	D	Q	C	Q	L	K	G	M	Q	I	G	G	A	A	V	H	R	Q	Q	A	L	V	L	I	N	E	D	N	A	K	S	E	D	V	V	Q	L	A	H	H	V	R	Q	K	V	G	E	K	F	N	V	W	L	E	P	E	V	R	F	I	G	A	S	G	E	V	S	A	V	E	T	I	S

Member	Chain	UniProtKB	GO term
d1hska2	A	P61431	GO:0005737
d1hska2	A	P61431	GO:0005829
d1hska2	A	P61431	GO:0008360
d1hska2	A	P61431	GO:0008762
d1hska2	A	P61431	GO:0009252
d1hska2	A	P61431	GO:0016491
d1hska2	A	P61431	GO:0050660
d1hska2	A	P61431	GO:0051301
d1hska2	A	P61431	GO:0071555
d1hska2	A	P61431	GO:0071949
d1uxya2	A	P08373	GO:0005737
d1uxya2	A	P08373	GO:0005829
d1uxya2	A	P08373	GO:0008360
d1uxya2	A	P08373	GO:0008762
d1uxya2	A	P08373	GO:0009252
d1uxya2	A	P08373	GO:0016491
d1uxya2	A	P08373	GO:0050660
d1uxya2	A	P08373	GO:0051301
d1uxya2	A	P08373	GO:0071555
d1uxya2	A	P08373	GO:0071949

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G	K	M	T	E	I	Q	A	K	M	D	D	L	T	E	R	R	E	S	K	Q	P	L	-	-	E	Y	P	S	C	G	S	V	F	Q	R	P	P	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	G	H	F	A	G	K	L	I	Q	D	S	N	L	Q	G	H	R	I	G	G	V	E	V	S	T	K	H	A	G	F	M	V	N	V	D	N	G	T	A	T	D	Y	E	N	L	I	H	Y	V	Q	K	T	V	K	E	K	F	G	I	E	L	N	R	E	V	R	I	I	G	-	-	-	-	-	-	-	-	E	H	P	K
-	-	-	V	T	P	Q	Q	V	F	N	A	V	C	H	M	R	T	T	K	L	P	D	P	K	V	N	G	N	A	G	A	F	F	K	N	P	V	V	S	A	E	T	A	K	A	L	L	S	Q	F	P	T	A	P	N	Y	P	Q	A	D	G	S	V	K	L	A	A	G	W	L	I	D	Q	C	Q	L	K	G	M	Q	I	G	G	A	A	V	H	R	Q	Q	A	L	V	L	I	N	E	D	N	A	K	S	E	D	V	V	Q	L	A	H	H	V	R	Q	K	V	G	E	K	F	N	V	W	L	E	P	E	V	R	F	I	G	A	S	G	E	V	S	A	V	E	T	I	S

									10										20										30										40										50										60										70										80										90										100										110										120										130										140
G	K	M	T	E	I	Q	A	K	M	D	D	L	T	E	R	R	E	S	K	Q	P	L	-	-	E	Y	P	S	C	G	S	V	F	Q	R	P	P	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	G	H	F	A	G	K	L	I	Q	D	S	N	L	Q	G	H	R	I	G	G	V	E	V	S	T	K	H	A	G	F	M	V	N	V	D	N	G	T	A	T	D	Y	E	N	L	I	H	Y	V	Q	K	T	V	K	E	K	F	G	I	E	L	N	R	E	V	R	I	I	G	-	-	-	-	-	-	-	-	E	H	P	K
-	-	-	V	T	P	Q	Q	V	F	N	A	V	C	H	M	R	T	T	K	L	P	D	P	K	V	N	G	N	A	G	A	F	F	K	N	P	V	V	S	A	E	T	A	K	A	L	L	S	Q	F	P	T	A	P	N	Y	P	Q	A	D	G	S	V	K	L	A	A	G	W	L	I	D	Q	C	Q	L	K	G	M	Q	I	G	G	A	A	V	H	R	Q	Q	A	L	V	L	I	N	E	D	N	A	K	S	E	D	V	V	Q	L	A	H	H	V	R	Q	K	V	G	E	K	F	N	V	W	L	E	P	E	V	R	F	I	G	A	S	G	E	V	S	A	V	E	T	I	S

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G	K	M	T	E	I	Q	A	K	M	D	D	L	T	E	R	R	E	S	K	Q	P	L	-	-	E	Y	P	S	C	G	S	V	F	Q	R	P	P	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	G	H	F	A	G	K	L	I	Q	D	S	N	L	Q	G	H	R	I	G	G	V	E	V	S	T	K	H	A	G	F	M	V	N	V	D	N	G	T	A	T	D	Y	E	N	L	I	H	Y	V	Q	K	T	V	K	E	K	F	G	I	E	L	N	R	E	V	R	I	I	G	-	-	-	-	-	-	-	-	E	H	P	K
-	-	-	V	T	P	Q	Q	V	F	N	A	V	C	H	M	R	T	T	K	L	P	D	P	K	V	N	G	N	A	G	A	F	F	K	N	P	V	V	S	A	E	T	A	K	A	L	L	S	Q	F	P	T	A	P	N	Y	P	Q	A	D	G	S	V	K	L	A	A	G	W	L	I	D	Q	C	Q	L	K	G	M	Q	I	G	G	A	A	V	H	R	Q	Q	A	L	V	L	I	N	E	D	N	A	K	S	E	D	V	V	Q	L	A	H	H	V	R	Q	K	V	G	E	K	F	N	V	W	L	E	P	E	V	R	F	I	G	A	S	G	E	V	S	A	V	E	T	I	S