PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1i6ua-  (   2 )    slmdpLAnALnhIsncErvgkkvvyIkpAsklIgrVLkvq-dngyIgefe
d1seia-  (   1 )    vmTdpIadMLtaIrnanmvrheklev-paskikreIAeILkregfIrdye
                        aaaaaaaaaaaaaa    bbbb    aaaaaaaa          bb

                             60        70        80        90        100 
d1i6ua-  (  52 )    fiedgraGifkVeLig-----kInkCgAIkp---rfpVkkfgYekFekry
d1seia-  (  50 )    yiednkqgiLrIfLkygpnervItgLkriSkpglrvyvkaheVprvl---
                    bb      bbbbb            bbb        bb            

                             110       120       130     
d1i6ua-  (  94 )    LpardfGiLIVsttqgV-sHeeAkkrglggrLLAyvy
d1seia-  (  97 )    ---nglgiAILsTsqgVlTDkeArqkgtGgeiIAyVi
                           bbbbb       aaaaaa    bbbbbbb

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1i6ua- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1i6ua- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Ribosomal protein S8	Ribosomal protein S8	Methanococcus jannaschii [TaxId: 2190]		view
d1seia- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1seia- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Ribosomal protein S8	Ribosomal protein S8	Bacillus stearothermophilus [TaxId: 1422]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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S	L	M	D	P	L	A	N	A	L	N	H	I	S	N	C	E	R	V	G	K	K	V	V	Y	I	K	P	A	S	K	L	I	G	R	V	L	K	V	Q	-	D	N	G	Y	I	G	E	F	E	F	I	E	D	G	R	A	G	I	F	K	V	E	L	I	G	-	-	-	-	-	K	I	N	K	C	G	A	I	K	P	-	-	-	R	F	P	V	K	K	F	G	Y	E	K	F	E	K	R	Y	L	P	A	R	D	F	G	I	L	I	V	S	T	T	Q	G	V	-	S	H	E	E	A	K	K	R	G	L	G	G	R	L	L	A	Y	V	Y
V	M	T	D	P	I	A	D	M	L	T	A	I	R	N	A	N	M	V	R	H	E	K	L	E	V	-	P	A	S	K	I	K	R	E	I	A	E	I	L	K	R	E	G	F	I	R	D	Y	E	Y	I	E	D	N	K	Q	G	I	L	R	I	F	L	K	Y	G	P	N	E	R	V	I	T	G	L	K	R	I	S	K	P	G	L	R	V	Y	V	K	A	H	E	V	P	R	V	L	-	-	-	-	-	-	N	G	L	G	I	A	I	L	S	T	S	Q	G	V	L	T	D	K	E	A	R	Q	K	G	T	G	G	E	I	I	A	Y	V	I

Member	Chain	UniProtKB	GO term
d1i6ua_	A	P54041	GO:0003735
d1i6ua_	A	P54041	GO:0005840
d1i6ua_	A	P54041	GO:0006412
d1i6ua_	A	P54041	GO:0019843
d1i6ua_	A	P54041	GO:0022627
d1i6ua_	A	P54041	GO:1990904
d1seia_	A	P56209	GO:0003735
d1seia_	A	P56209	GO:0005737
d1seia_	A	P56209	GO:0005840
d1seia_	A	P56209	GO:0006412
d1seia_	A	P56209	GO:0019843
d1seia_	A	P56209	GO:0022627
d1seia_	A	P56209	GO:1990904

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S	L	M	D	P	L	A	N	A	L	N	H	I	S	N	C	E	R	V	G	K	K	V	V	Y	I	K	P	A	S	K	L	I	G	R	V	L	K	V	Q	-	D	N	G	Y	I	G	E	F	E	F	I	E	D	G	R	A	G	I	F	K	V	E	L	I	G	-	-	-	-	-	K	I	N	K	C	G	A	I	K	P	-	-	-	R	F	P	V	K	K	F	G	Y	E	K	F	E	K	R	Y	L	P	A	R	D	F	G	I	L	I	V	S	T	T	Q	G	V	-	S	H	E	E	A	K	K	R	G	L	G	G	R	L	L	A	Y	V	Y
V	M	T	D	P	I	A	D	M	L	T	A	I	R	N	A	N	M	V	R	H	E	K	L	E	V	-	P	A	S	K	I	K	R	E	I	A	E	I	L	K	R	E	G	F	I	R	D	Y	E	Y	I	E	D	N	K	Q	G	I	L	R	I	F	L	K	Y	G	P	N	E	R	V	I	T	G	L	K	R	I	S	K	P	G	L	R	V	Y	V	K	A	H	E	V	P	R	V	L	-	-	-	-	-	-	N	G	L	G	I	A	I	L	S	T	S	Q	G	V	L	T	D	K	E	A	R	Q	K	G	T	G	G	E	I	I	A	Y	V	I

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S	L	M	D	P	L	A	N	A	L	N	H	I	S	N	C	E	R	V	G	K	K	V	V	Y	I	K	P	A	S	K	L	I	G	R	V	L	K	V	Q	-	D	N	G	Y	I	G	E	F	E	F	I	E	D	G	R	A	G	I	F	K	V	E	L	I	G	-	-	-	-	-	K	I	N	K	C	G	A	I	K	P	-	-	-	R	F	P	V	K	K	F	G	Y	E	K	F	E	K	R	Y	L	P	A	R	D	F	G	I	L	I	V	S	T	T	Q	G	V	-	S	H	E	E	A	K	K	R	G	L	G	G	R	L	L	A	Y	V	Y
V	M	T	D	P	I	A	D	M	L	T	A	I	R	N	A	N	M	V	R	H	E	K	L	E	V	-	P	A	S	K	I	K	R	E	I	A	E	I	L	K	R	E	G	F	I	R	D	Y	E	Y	I	E	D	N	K	Q	G	I	L	R	I	F	L	K	Y	G	P	N	E	R	V	I	T	G	L	K	R	I	S	K	P	G	L	R	V	Y	V	K	A	H	E	V	P	R	V	L	-	-	-	-	-	-	N	G	L	G	I	A	I	L	S	T	S	Q	G	V	L	T	D	K	E	A	R	Q	K	G	T	G	G	E	I	I	A	Y	V	I

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S	L	M	D	P	L	A	N	A	L	N	H	I	S	N	C	E	R	V	G	K	K	V	V	Y	I	K	P	A	S	K	L	I	G	R	V	L	K	V	Q	-	D	N	G	Y	I	G	E	F	E	F	I	E	D	G	R	A	G	I	F	K	V	E	L	I	G	-	-	-	-	-	K	I	N	K	C	G	A	I	K	P	-	-	-	R	F	P	V	K	K	F	G	Y	E	K	F	E	K	R	Y	L	P	A	R	D	F	G	I	L	I	V	S	T	T	Q	G	V	-	S	H	E	E	A	K	K	R	G	L	G	G	R	L	L	A	Y	V	Y
V	M	T	D	P	I	A	D	M	L	T	A	I	R	N	A	N	M	V	R	H	E	K	L	E	V	-	P	A	S	K	I	K	R	E	I	A	E	I	L	K	R	E	G	F	I	R	D	Y	E	Y	I	E	D	N	K	Q	G	I	L	R	I	F	L	K	Y	G	P	N	E	R	V	I	T	G	L	K	R	I	S	K	P	G	L	R	V	Y	V	K	A	H	E	V	P	R	V	L	-	-	-	-	-	-	N	G	L	G	I	A	I	L	S	T	S	Q	G	V	L	T	D	K	E	A	R	Q	K	G	T	G	G	E	I	I	A	Y	V	I