BASE   PART 1   PART 2   PART 3   PART 4  
Superfamily : 55961 [ Bet v1-like ]
Class : Alpha and beta proteins (a+b)
Fold : TBP-like
# of Members : 6
Superposed Structure
solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x
beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x
hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x
 
                             10        20        30        40        50  
d1ln1a-  (   8 )              FseeqFweACaeLqqpalagadwqllvets-gIsiyrlld
d2moua-  (   1 )         mdfkaiAqqtAqevlgynr-dts---gwkvvktsk-kitvSSkaS
d2psoa1  ( 909 )             ylnhliqglqeak------efkgwvtcsSt-dnTdLafkvg
d2r55a1  (   6 )           aaqmSeaVAekMlqyrr-dt-a--gwkicregn-gvsVswrpS
d5i9ja-  ( 231 )    fsaqereYirqGkeAtavvdqila-qee---nWkfeknneygDtvytiev
d6l1ma-  (   4 )        lsdvasfatkLkntLiqyhs-ieed--kWrvakktk-dVtVwrkpS
                                aaaaaa               bbbb      bbbbb  

                             60        70        80        90        100 
d1ln1a-  (  47 )    kktglyeykvfgvledÇsptlLAdIymdsd-yrkqwDqyVkeLyeqecn-
d2moua-  (  41 )    rkfhgnlYRveGiip-esPaklsdFlyqtg-dritWDkSlqvYnmvhrid
d2psoa1  ( 946 )    dgnplklWkASVeVe-appsvVLnrVLr---erhlWddFv--qwvvetld
d2r55a1  (  44 )    vefpgnLYrGegiVy-GtleeVwdCVkpgg-lrvkWDenVtgfeiiqsit
d5i9ja-  ( 277 )    p-fhgktFilktflp-CpAelvyqEvilqperMvlwnktvtaCqilqrve
d6l1ma-  (  46 )    eefngyLYkAqgvId-dlVysIIdhIrpgp-srldwdslMtsLdilenfe
                          bbbbbbbb    aaaaaaaa      aaaa     bbbb bb  

                             110       120       130       140       150 
d1ln1a-  (  95 )    -getVVYwEvkyp--fpmsnRDyVYlRqrrdldmegrkIhVIlarstsMp
d2moua-  (  89 )    sdtFicHtitqsfavgsispRDfiDlvYikrye---gnmniiSskSvdFp
d2psoa1  ( 992 )    rqtEiYqyvlnsmap---hpsdFVVlrtwtdlp----gmCtLvslsvehe
d2r55a1  (  94 )    dtLcVSrtstpsaamklIspRDFVdLVlvkrye---dgtISsNathvehp
d5i9ja-  ( 326 )    -ntlisydvsagaaggvvspRDFvnvrrier------drylSSGiatshs
d6l1ma-  (  94 )    enCcVmryTtagqg--gisprEFVDFsytvgyk---e-GlLSCgiSldwd
                      bbbbbbb           bbbbbbbbbb         bbbbbbb    

                             160       170       180       190       200 
d1ln1a-  ( 142 )    qlgersgvirVkqYkqsLAIesDg--kkGSkVFmyyfdnpggqipswlin
d2moua-  ( 136 )    eyppssnyirGynhpCgFvCsPmeenpaySklvmFvqteMrgklspsiie
d2psoa1  (1039 )    Aq----ggvrAvVmdsqylIepcgs--gkSrLtHiCRidlk-ghpwsgfG
d2r55a1  ( 141 )    lCppkpgfvrGfnhPcgcFCeplp--ptkTnLVTFfHtdLsgylpqnvvd
d5i9ja-  ( 371 )    akppthkyvrGengPgGfivlksasnprvCtFvwilntdlkgrlprylih
d6l1ma-  ( 140 )    --ekrpefvrGyNhPcgwFCvplkdnpnqSlLTGYiQtdlrgmipqsavd
                            bb  b  bbbbbbb       bbbbbbb b       aaaaa

                             210       220       230   
d1ln1a-  ( 190 )    waaknGvpnflkdmarAÇqny              
d2moua-  ( 186 )    ktMpsnlvnfilnAkdGikahrtpsrrgfhhnshs
d2psoa1  (1088 )    hlcaaeVArIrnsfqp                   
d2r55a1  ( 191 )    sfFprSMtrFYanLqkaVkqfhe            
d5i9ja-  ( 421 )    qslaatMfeFAfhlrqriselgar           
d6l1ma-  ( 188 )    taMastLtnFYgdLrkal                 
                    aaaaaaaaaaaaaaaaa
 

 

Domain IDNameFamilySourceDomainSTRING-DB
Phosphatidylcholine transfer proteinSTAR domainHuman (Homo sapiens) [TaxId: 9606]view
automated matchesautomated matchesHuman (Homo sapiens) [TaxId: 9606]view
Star-related lipid transfer protein 13STAR domainHuman (Homo sapiens) [TaxId: 9606]view
automated matchesautomated matchesHuman (Homo sapiens) [TaxId: 9606]view
automated matchesSTAR domainHuman (Homo sapiens) [TaxId: 9606]view
automated matchesautomated matchesHuman (Homo sapiens) [TaxId: 9606]view

 

No outliers

Created with Raphaëld2psoa1d1ln1a-d6l1ma-d2r55a1d5i9ja-d2moua-
FeatureDownload
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

 

10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230
- - - - - - - - - - F S E E Q F W E A C A E L Q Q P A L A G A D W Q L L V E T S - G I S I Y R L L D K K T G L Y E Y K V F G V L E D C S P T L L A D I Y M D S D - Y R K Q W D Q Y V K E L Y E Q E C N - - G E T V V Y W E V K Y P - - F P M S N R D Y V Y L R Q R R D L D M E G R K I H V I L A R S T S M P Q L G E R S G V I R V K Q Y K Q S L A I E S D G - - K K G S K V F M Y Y F D N P G G Q I P S W L I N W A A K N G V P N F L K D M A R A C Q N Y - - - - - - - - - - - - - -
- - - - - M D F K A I A Q Q T A Q E V L G Y N R - D T S - - - G W K V V K T S K - K I T V S S K A S R K F H G N L Y R V E G I I P - E S P A K L S D F L Y Q T G - D R I T W D K S L Q V Y N M V H R I D S D T F I C H T I T Q S F A V G S I S P R D F I D L V Y I K R Y E - - - G N M N I I S S K S V D F P E Y P P S S N Y I R G Y N H P C G F V C S P M E E N P A Y S K L V M F V Q T E M R G K L S P S I I E K T M P S N L V N F I L N A K D G I K A H R T P S R R G F H H N S H S
- - - - - - - - - Y L N H L I Q G L Q E A K - - - - - - E F K G W V T C S S T - D N T D L A F K V G D G N P L K L W K A S V E V E - A P P S V V L N R V L R - - - E R H L W D D F V - - Q W V V E T L D R Q T E I Y Q Y V L N S M A P - - - H P S D F V V L R T W T D L P - - - - G M C T L V S L S V E H E A Q - - - - G G V R A V V M D S Q Y L I E P C G S - - G K S R L T H I C R I D L K - G H P W S G F G H L C A A E V A R I R N S F Q P - - - - - - - - - - - - - - - - - - -
- - - - - - - A A Q M S E A V A E K M L Q Y R R - D T - A - - G W K I C R E G N - G V S V S W R P S V E F P G N L Y R G E G I V Y - G T L E E V W D C V K P G G - L R V K W D E N V T G F E I I Q S I T D T L C V S R T S T P S A A M K L I S P R D F V D L V L V K R Y E - - - D G T I S S N A T H V E H P L C P P K P G F V R G F N H P C G C F C E P L P - - P T K T N L V T F F H T D L S G Y L P Q N V V D S F F P R S M T R F Y A N L Q K A V K Q F H E - - - - - - - - - - - -
F S A Q E R E Y I R Q G K E A T A V V D Q I L A - Q E E - - - N W K F E K N N E Y G D T V Y T I E V P - F H G K T F I L K T F L P - C P A E L V Y Q E V I L Q P E R M V L W N K T V T A C Q I L Q R V E - N T L I S Y D V S A G A A G G V V S P R D F V N V R R I E R - - - - - - D R Y L S S G I A T S H S A K P P T H K Y V R G E N G P G G F I V L K S A S N P R V C T F V W I L N T D L K G R L P R Y L I H Q S L A A T M F E F A F H L R Q R I S E L G A R - - - - - - - - - - -
- - - - L S D V A S F A T K L K N T L I Q Y H S - I E E D - - K W R V A K K T K - D V T V W R K P S E E F N G Y L Y K A Q G V I D - D L V Y S I I D H I R P G P - S R L D W D S L M T S L D I L E N F E E N C C V M R Y T T A G Q G - - G I S P R E F V D F S Y T V G Y K - - - E - G L L S C G I S L D W D - - E K R P E F V R G Y N H P C G W F C V P L K D N P N Q S L L T G Y I Q T D L R G M I P Q S A V D T A M A S T L T N F Y G D L R K A L - - - - - - - - - - - - - - - - -

 

 

 

 

 

 
Contact: Prof. R. Sowdhamini - mini@ncbs.res.in