PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1k2yx4  ( 368 )       psdistpeinItvt---------------edsKfaiieaLqrda---
d1wjwa1  (   8 )    aiyvdlpnrqlkvkvadrrvisttdaerqavtppglqeaindlvkkyt--
d6y8ya4  ( 426 )        rnYfCrFDYeaId---------------praAfyLmkdLeavIsdk
                           b   bb                       aaaaaaaaaa    

                             60        70        80        90        100 
d1k2yx4  ( 397 )    qWg------------egnittl-------------dGVrVdYp-kgwGlV
d1wjwa1  (  56 )    --------------------------------------------lArAfv
d6y8ya4  ( 457 )    aFcsqkfavgnsvysVekAdnfeyidpvdgtvarnqGLrIiFsesSrLiF
                                                                 bbbbb

                             110       120       130       140       150 
d1k2yx4  ( 421 )    rAsnt----tpvLvLrFeAdt-----------eelerIktvFrnqLkavd
d1wjwa1  (  62 )    rpsgt----edivrvyAeAns----------qesAdrlAyevSllvfqla
d6y8ya4  ( 507 )    rlsgtgvgvgatIrIyAesferdperhnrepqvvLgpLiaIAlkiSdIhe
                    b           bbbbbbb              a aaaaaaaaaaa aa 

                             160 
d1k2yx4  ( 457 )    s----slpVpf
d1wjwa1  (  98 )    gGigerpqp  
d6y8ya4  ( 557 )    rTgrrgptvit

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1k2yx4 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1k2yx4 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Phosphomannomutase/phosphoglucomutase	Phosphoglucomutase, C-terminal domain	Pseudomonas aeruginosa [TaxId: 287]	view
d1wjwa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1wjwa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Phosphoacetylglucosamine mutase	Phosphoglucomutase, C-terminal domain	Mouse (Mus musculus) [TaxId: 10090]	view
d6y8ya4 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d6y8ya4 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Clupea harengus [TaxId: 7950]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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A	I	Y	V	D	L	P	N	R	Q	L	K	V	K	V	A	D	R	R	V	I	S	T	T	D	A	E	R	Q	A	V	T	P	P	G	L	Q	E	A	I	N	D	L	V	K	K	Y	T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	L	A	R	A	F	V	R	P	S	G	T	-	-	-	-	E	D	I	V	R	V	Y	A	E	A	N	S	-	-	-	-	-	-	-	-	-	-	Q	E	S	A	D	R	L	A	Y	E	V	S	L	L	V	F	Q	L	A	G	G	I	G	E	R	P	Q	P	-	-
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Member	Chain	UniProtKB	GO term
d1k2yx4	X	P26276	GO:0000287
d1k2yx4	X	P26276	GO:0004614
d1k2yx4	X	P26276	GO:0004615
d1k2yx4	X	P26276	GO:0005975
d1k2yx4	X	P26276	GO:0009103
d1k2yx4	X	P26276	GO:0009243
d1k2yx4	X	P26276	GO:0009244
d1k2yx4	X	P26276	GO:0009298
d1k2yx4	X	P26276	GO:0016853
d1k2yx4	X	P26276	GO:0016868
d1k2yx4	X	P26276	GO:0042121
d1k2yx4	X	P26276	GO:0046872
d1k2yx4	X	P26276	GO:0000287
d1k2yx4	X	P26276	GO:0004614
d1k2yx4	X	P26276	GO:0004615
d1k2yx4	X	P26276	GO:0005975
d1k2yx4	X	P26276	GO:0009103
d1k2yx4	X	P26276	GO:0009243
d1k2yx4	X	P26276	GO:0009244
d1k2yx4	X	P26276	GO:0009298
d1k2yx4	X	P26276	GO:0016853
d1k2yx4	X	P26276	GO:0016868
d1k2yx4	X	P26276	GO:0042121
d1k2yx4	X	P26276	GO:0046872
d1k2yx4	X	P26276	GO:0000287
d1k2yx4	X	P26276	GO:0004614
d1k2yx4	X	P26276	GO:0004615
d1k2yx4	X	P26276	GO:0005975
d1k2yx4	X	P26276	GO:0009103
d1k2yx4	X	P26276	GO:0009243
d1k2yx4	X	P26276	GO:0009244
d1k2yx4	X	P26276	GO:0009298
d1k2yx4	X	P26276	GO:0016853
d1k2yx4	X	P26276	GO:0016868
d1k2yx4	X	P26276	GO:0042121
d1k2yx4	X	P26276	GO:0046872
d1k2yx4	X	P26276	GO:0000287
d1k2yx4	X	P26276	GO:0004614
d1k2yx4	X	P26276	GO:0004615
d1k2yx4	X	P26276	GO:0005975
d1k2yx4	X	P26276	GO:0009103
d1k2yx4	X	P26276	GO:0009243
d1k2yx4	X	P26276	GO:0009244
d1k2yx4	X	P26276	GO:0009298
d1k2yx4	X	P26276	GO:0016853
d1k2yx4	X	P26276	GO:0016868
d1k2yx4	X	P26276	GO:0042121
d1k2yx4	X	P26276	GO:0046872
d1k2yx4	X	P26276	GO:0000287
d1k2yx4	X	P26276	GO:0004614
d1k2yx4	X	P26276	GO:0004615
d1k2yx4	X	P26276	GO:0005975
d1k2yx4	X	P26276	GO:0009103
d1k2yx4	X	P26276	GO:0009243
d1k2yx4	X	P26276	GO:0009244
d1k2yx4	X	P26276	GO:0009298
d1k2yx4	X	P26276	GO:0016853
d1k2yx4	X	P26276	GO:0016868
d1k2yx4	X	P26276	GO:0042121
d1k2yx4	X	P26276	GO:0046872
d1k2yx4	X	P26276	GO:0000287
d1k2yx4	X	P26276	GO:0004614
d1k2yx4	X	P26276	GO:0004615
d1k2yx4	X	P26276	GO:0005975
d1k2yx4	X	P26276	GO:0009103
d1k2yx4	X	P26276	GO:0009243
d1k2yx4	X	P26276	GO:0009244
d1k2yx4	X	P26276	GO:0009298
d1k2yx4	X	P26276	GO:0016853
d1k2yx4	X	P26276	GO:0016868
d1k2yx4	X	P26276	GO:0042121
d1k2yx4	X	P26276	GO:0046872
d1k2yx4	X	P26276	GO:0000287
d1k2yx4	X	P26276	GO:0004614
d1k2yx4	X	P26276	GO:0004615
d1k2yx4	X	P26276	GO:0005975
d1k2yx4	X	P26276	GO:0009103
d1k2yx4	X	P26276	GO:0009243
d1k2yx4	X	P26276	GO:0009244
d1k2yx4	X	P26276	GO:0009298
d1k2yx4	X	P26276	GO:0016853
d1k2yx4	X	P26276	GO:0016868
d1k2yx4	X	P26276	GO:0042121
d1k2yx4	X	P26276	GO:0046872

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A	I	Y	V	D	L	P	N	R	Q	L	K	V	K	V	A	D	R	R	V	I	S	T	T	D	A	E	R	Q	A	V	T	P	P	G	L	Q	E	A	I	N	D	L	V	K	K	Y	T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	L	A	R	A	F	V	R	P	S	G	T	-	-	-	-	E	D	I	V	R	V	Y	A	E	A	N	S	-	-	-	-	-	-	-	-	-	-	Q	E	S	A	D	R	L	A	Y	E	V	S	L	L	V	F	Q	L	A	G	G	I	G	E	R	P	Q	P	-	-
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A	I	Y	V	D	L	P	N	R	Q	L	K	V	K	V	A	D	R	R	V	I	S	T	T	D	A	E	R	Q	A	V	T	P	P	G	L	Q	E	A	I	N	D	L	V	K	K	Y	T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	L	A	R	A	F	V	R	P	S	G	T	-	-	-	-	E	D	I	V	R	V	Y	A	E	A	N	S	-	-	-	-	-	-	-	-	-	-	Q	E	S	A	D	R	L	A	Y	E	V	S	L	L	V	F	Q	L	A	G	G	I	G	E	R	P	Q	P	-	-
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A	I	Y	V	D	L	P	N	R	Q	L	K	V	K	V	A	D	R	R	V	I	S	T	T	D	A	E	R	Q	A	V	T	P	P	G	L	Q	E	A	I	N	D	L	V	K	K	Y	T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	L	A	R	A	F	V	R	P	S	G	T	-	-	-	-	E	D	I	V	R	V	Y	A	E	A	N	S	-	-	-	-	-	-	-	-	-	-	Q	E	S	A	D	R	L	A	Y	E	V	S	L	L	V	F	Q	L	A	G	G	I	G	E	R	P	Q	P	-	-
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