PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1hp1a1  ( 363 )       kigeTngrLeGdrdkVrfvqtnMGrLILaAQmdrT-----gAdFAVM
d2z1aa1  ( 330 )    mqqvIaeAkvdLvGeravVrrreSnLGNLITdGMlwkTr--nagTqIALQ
d3c9fa1  ( 338 )     dtligyVktnyyvDy-vpidhpkSIFnLLalkILktLpkskheeRITII
                         bbb                 aaaaaaa              bbbb

                             60        70        80        90        100 
d1hp1a1  ( 405 )    SGggIrdSIeagdIsyknVlkVQpfgnvVVyadMtGkeVidYLtaVAqmk
d2z1aa1  ( 378 )    nGggIrasIpkgpItvgkVyeVLpfgntLVVMdLkGkeIlaALenGVsqW
d3c9fa1  ( 386 )    nTgSIrydLykgpYtidskfiVSpfeniWvnItVpKsvAtkVAakLndyi
                    b333       bbb aaaaaaa      bbbbbbbaaaa  aaaaa    

                             110       120       130       140       150 
d1hp1a1  ( 455 )    p-dsgaYPQFA---nVsFvak-----d----------------------g
d2z1aa1  ( 428 )    entagrFLQVS---gLrYAFdLsrpag----------------------s
d3c9fa1  ( 438 )    sa----srLkPphQydlqvqqeklpkgyvthddfgadgddtlhravvnfp
                                                                      

                             160       170       180       190       200 
d1hp1a1  ( 474 )    kLndLkIk----gepVdpaktyrMATLnfNAtggdgYprldnk---pgyv
d2z1aa1  ( 453 )    RVvrVeVktekgyvpLdleatyrVVVNnfIAnGgdgFtvLkeA--qgyrv
d3c9fa1  ( 497 )    VpnVIqSveindevd----spVnLVFYsfItpnIiwALkelnfsteqvpt
                       bbbb             bbbbbbb   a                  b

                             210       220       230      
d1hp1a1  ( 517 )    nt-gfiDAeVLkayIqksspLdvsvyepkgeVswq   
d2z1aa1  ( 501 )    dt-gfsdAeSFmdyLkelkvVea---glegrIeVlnep
d3c9fa1  ( 543 )    pysdiyLGtLLnefVan--------------------n
                    bb    aaaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1hp1a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1hp1a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain	5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain	Escherichia coli [TaxId: 562]	view
d2z1aa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2z1aa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain	5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain	Thermus thermophilus [TaxId: 274]	view
d3c9fa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3c9fa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain	5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain	Yeast (Candida albicans) [TaxId: 5476]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1hp1a1	A	P07024	GO:0000166
d1hp1a1	A	P07024	GO:0008252
d1hp1a1	A	P07024	GO:0008253
d1hp1a1	A	P07024	GO:0008768
d1hp1a1	A	P07024	GO:0009166
d1hp1a1	A	P07024	GO:0016787
d1hp1a1	A	P07024	GO:0016788
d1hp1a1	A	P07024	GO:0030288
d1hp1a1	A	P07024	GO:0042597
d1hp1a1	A	P07024	GO:0046872
d1hp1a1	A	P07024	GO:0106411
d1hp1a1	A	P07024	GO:0000166
d1hp1a1	A	P07024	GO:0008252
d1hp1a1	A	P07024	GO:0008253
d1hp1a1	A	P07024	GO:0008768
d1hp1a1	A	P07024	GO:0009166
d1hp1a1	A	P07024	GO:0016787
d1hp1a1	A	P07024	GO:0016788
d1hp1a1	A	P07024	GO:0030288
d1hp1a1	A	P07024	GO:0042597
d1hp1a1	A	P07024	GO:0046872
d1hp1a1	A	P07024	GO:0106411
d1hp1a1	A	P07024	GO:0000166
d1hp1a1	A	P07024	GO:0008252
d1hp1a1	A	P07024	GO:0008253
d1hp1a1	A	P07024	GO:0008768
d1hp1a1	A	P07024	GO:0009166
d1hp1a1	A	P07024	GO:0016787
d1hp1a1	A	P07024	GO:0016788
d1hp1a1	A	P07024	GO:0030288
d1hp1a1	A	P07024	GO:0042597
d1hp1a1	A	P07024	GO:0046872
d1hp1a1	A	P07024	GO:0106411
d2z1aa1	A	Q5SIP1	GO:0000166
d2z1aa1	A	Q5SIP1	GO:0008252
d2z1aa1	A	Q5SIP1	GO:0009166
d2z1aa1	A	Q5SIP1	GO:0016787
d2z1aa1	A	Q5SIP1	GO:0016788
d2z1aa1	A	Q5SIP1	GO:0046872
d2z1aa1	A	Q5SIP1	GO:0000166
d2z1aa1	A	Q5SIP1	GO:0008252
d2z1aa1	A	Q5SIP1	GO:0009166
d2z1aa1	A	Q5SIP1	GO:0016787
d2z1aa1	A	Q5SIP1	GO:0016788
d2z1aa1	A	Q5SIP1	GO:0046872
d2z1aa1	A	Q5SIP1	GO:0000166
d2z1aa1	A	Q5SIP1	GO:0008252
d2z1aa1	A	Q5SIP1	GO:0009166
d2z1aa1	A	Q5SIP1	GO:0016787
d2z1aa1	A	Q5SIP1	GO:0016788
d2z1aa1	A	Q5SIP1	GO:0046872
d3c9fa1	A	Q5A5Q7	GO:0009166
d3c9fa1	A	Q5A5Q7	GO:0016787
d3c9fa1	A	Q5A5Q7	GO:0009166
d3c9fa1	A	Q5A5Q7	GO:0016787
d3c9fa1	A	Q5A5Q7	GO:0009166
d3c9fa1	A	Q5A5Q7	GO:0016787

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M	Q	Q	V	I	A	E	A	K	V	D	L	V	G	E	R	A	V	V	R	R	R	E	S	N	L	G	N	L	I	T	D	G	M	L	W	K	T	R	-	-	N	A	G	T	Q	I	A	L	Q	N	G	G	G	I	R	A	S	I	P	K	G	P	I	T	V	G	K	V	Y	E	V	L	P	F	G	N	T	L	V	V	M	D	L	K	G	K	E	I	L	A	A	L	E	N	G	V	S	Q	W	E	N	T	A	G	R	F	L	Q	V	S	-	-	-	G	L	R	Y	A	F	D	L	S	R	P	A	G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	S	R	V	V	R	V	E	V	K	T	E	K	G	Y	V	P	L	D	L	E	A	T	Y	R	V	V	V	N	N	F	I	A	N	G	G	D	G	F	T	V	L	K	E	A	-	-	Q	G	Y	R	V	D	T	-	G	F	S	D	A	E	S	F	M	D	Y	L	K	E	L	K	V	V	E	A	-	-	-	G	L	E	G	R	I	E	V	L	N	E	P
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-	D	T	L	I	G	Y	V	K	T	N	Y	Y	V	D	Y	-	V	P	I	D	H	P	K	S	I	F	N	L	L	A	L	K	I	L	K	T	L	P	K	S	K	H	E	E	R	I	T	I	I	N	T	G	S	I	R	Y	D	L	Y	K	G	P	Y	T	I	D	S	K	F	I	V	S	P	F	E	N	I	W	V	N	I	T	V	P	K	S	V	A	T	K	V	A	A	K	L	N	D	Y	I	S	A	-	-	-	-	S	R	L	K	P	P	H	Q	Y	D	L	Q	V	Q	Q	E	K	L	P	K	G	Y	V	T	H	D	D	F	G	A	D	G	D	D	T	L	H	R	A	V	V	N	F	P	V	P	N	V	I	Q	S	V	E	I	N	D	E	V	D	-	-	-	-	S	P	V	N	L	V	F	Y	S	F	I	T	P	N	I	I	W	A	L	K	E	L	N	F	S	T	E	Q	V	P	T	P	Y	S	D	I	Y	L	G	T	L	L	N	E	F	V	A	N	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	N

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