PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1cfea-  (   1 )                                                qnspqD
d1qnxa1  (   1 )    nnYçkikçlkggvHTAçkygslkpnÇgnkvvvsygLtkqek---qdIlke
d1smba-  (   4 )                                             saskqfhne
d1xtaa1  (   2 )                                      vdfnsEsTrrkkkqke
                                                                aaaaaa

                             60        70        80        90        100 
d1cfea-  (   7 )    YlavHndARaqvg-------vg------pMswdanlasrAqnyAnsragd
d1qnxa1  (  48 )    HndFRqkIarglEtrGnpGpQppAknMknLvwndeLayVAqVwANQ----
d1smba-  (  13 )    VlkaHneyRqkHg-------VppLk-lknl--nreAqqySeaLAst----
d1xtaa1  (  18 )    IvdlHnsLRrrvs--------ptAsnmlkMewYpeAasnAerwAnt----
                    aaaaaaaaaa                    bb aaaaaaaaaaa      

                             110       120       130       140       150 
d1cfea-  (  44 )    Çnlihs----------gaGEnlAkggg----dftGraAvqlWvserpSyn
d1qnxa1  (  94 )    ÇqyghD--tÇrdVakyqVgQNVAltgstaakyddPvkLVkmWEdeVkdYn
d1smba-  (  50 )    rilkhSpessr-----gqgENlAwas----ydQtGkeVAdrWyseiknYn
d1xtaa1  (  56 )    çslnhSpdnlrvlegiqÇgESIymSs----nartWteIIhlWhdeyknFv
                                       bbbbbb         aaaaaaaaa33333  

                             160       170       180       190       200 
d1cfea-  (  80 )    yatnqçvggk---kçrhYtqvvWrnSvrlGÇgrarÇn---nGwwFiSÇnY
d1qnxa1  ( 142 )    pk-kkfs-gNdflkTghYTQMVWAnTkeVGÇGSIkYiqekwhkHYLVÇNY
d1smba-  (  92 )    fq-----qpgftsgTghFTaMVWknTkkMGVGkasAs---dgsSFVVArY
d1xtaa1  ( 102 )    ygvgasppgsv---tghYTQIVwyqTyrAGÇaVsyÇpssaw-syFYVÇQY
                                   aaaaaa      bbbbbbbb        bbbbbbb

                             210       
d1cfea-  ( 124 )    dpvGnwi----gqrpy   
d1qnxa1  ( 190 )    GpsGnf----kneeLYqtk
d1smba-  ( 134 )    fpaGnvvnegfFeeNVlpp
d1xtaa1  ( 148 )    ÇpsGnf--qgktatPYklg
                    b

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1cfea- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1cfea- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Pathogenesis-related protein 1 (PR1)	PR-1-like	Tomato (Lycopersicon esculentum), P14a [TaxId: 4081]	view
d1qnxa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1qnxa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Insect allergen 5 (AG5)	PR-1-like	Yellow jacket (Vespula vulgaris), Ves v 5 [TaxId: 7454]	view
d1smba- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1smba- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Golgi-associated PR-1 protein	PR-1-like	Human (Homo sapiens) [TaxId: 9606]	view
d1xtaa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1xtaa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	PR-1-like	Chinese cobra (Naja atra) [TaxId: 8656]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1cfea_	A	P04284	GO:0005576
d1cfea_	A	P04284	GO:0005615
d1cfea_	A	P04284	GO:0031640
d1cfea_	A	P04284	GO:0050832
d1smba_	A	Q9H4G4	GO:0000139
d1smba_	A	Q9H4G4	GO:0005576
d1smba_	A	Q9H4G4	GO:0005615
d1smba_	A	Q9H4G4	GO:0005794
d1smba_	A	Q9H4G4	GO:0010634
d1smba_	A	Q9H4G4	GO:0010718
d1smba_	A	Q9H4G4	GO:0016020
d1smba_	A	Q9H4G4	GO:0042803
d1smba_	A	Q9H4G4	GO:0070062
d1smba_	A	Q9H4G4	GO:0070374

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									10										20										30										40										50										60										70										80										90										100										110										120										130										140										150										160										170										180										190										200										210
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