PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2pbdp-  (   1 )    agwnayid-nLmadg----tCqDAAIVGykdspsvwaAvpgktFvnItpa
d3d9ya-  (   1 )     swqayVdtsLlgtg----kIdrAAIVsr--aGdswaasa--gF-nLspq
d4qwoa1  (   2 )    aewhkIie-dIsknn----kFedAAIVdykttknvlAaipnrtFakInpg
d5em0a1  (   2 )     swqtyVddhLmdiegtgqhLtSAAIFGt--dgtvwAksa--sFpefkpn
                      aaaaaa a            bbbbbb      bbbb          aa

                             60        70        80        90        100 
d2pbdp-  (  46 )    evgvLvg--kdrssFyvnGltLGgqkCsVirdsLlqdgefsMdLrTkstg
d3d9ya-  (  42 )    eiqgLaaGFqdppsmfgtgIiLagqkY-TirAe-g----rSIyGklq---
d4qwoa1  (  47 )    eVipLit---nhnil---kPlIGqkfCivytnsld-entyA-ELltgy--
d5em0a1  (  48 )    EIdaIikeFneagqLaptgLfLGgakYmviqgeag----aVirGkkg---
                    aaaaaaa            bbb  bbbbbbbbb       bbbbbb    

                             110       120       130       140    
d2pbdp-  (  94 )    gaptfnVTVTkTdkTLVLLMGkegvhgglInkkCyemAshLrrsqy
d3d9ya-  (  84 )    ---keGIICVATklCILVShYpetTlpgeAakiTealAdyLvgvgy
d4qwoa1  (  89 )    -apvspIVIArThtALIFL-GkpttsrrdVyrtCrdhAtrvratgn
d5em0a1  (  91 )    ---aGGIÇIkkTgqAMVFGiYdepVapgqÇnmvVerLGdyLldqgm
                         bbbbbb   bbbbbbb     aaaaaaaaaaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d2pbdp- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2pbdp- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	Profilin (actin-binding protein)	Human (Homo sapiens) [TaxId: 9606]	view
d3d9ya- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3d9ya- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]	view
d4qwoa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4qwoa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Monkeypox virus [TaxId: 619591]	view
d5em0a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d5em0a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	Profilin (actin-binding protein)	Artemisia vulgaris [TaxId: 4220]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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A	G	W	N	A	Y	I	D	-	N	L	M	A	D	G	-	-	-	-	T	C	Q	D	A	A	I	V	G	Y	K	D	S	P	S	V	W	A	A	V	P	G	K	T	F	V	N	I	T	P	A	E	V	G	V	L	V	G	-	-	K	D	R	S	S	F	Y	V	N	G	L	T	L	G	G	Q	K	C	S	V	I	R	D	S	L	L	Q	D	G	E	F	S	M	D	L	R	T	K	S	T	G	G	A	P	T	F	N	V	T	V	T	K	T	D	K	T	L	V	L	L	M	G	K	E	G	V	H	G	G	L	I	N	K	K	C	Y	E	M	A	S	H	L	R	R	S	Q	Y
-	S	W	Q	A	Y	V	D	T	S	L	L	G	T	G	-	-	-	-	K	I	D	R	A	A	I	V	S	R	-	-	A	G	D	S	W	A	A	S	A	-	-	G	F	-	N	L	S	P	Q	E	I	Q	G	L	A	A	G	F	Q	D	P	P	S	M	F	G	T	G	I	I	L	A	G	Q	K	Y	-	T	I	R	A	E	-	G	-	-	-	-	R	S	I	Y	G	K	L	Q	-	-	-	-	-	-	K	E	G	I	I	C	V	A	T	K	L	C	I	L	V	S	H	Y	P	E	T	T	L	P	G	E	A	A	K	I	T	E	A	L	A	D	Y	L	V	G	V	G	Y
A	E	W	H	K	I	I	E	-	D	I	S	K	N	N	-	-	-	-	K	F	E	D	A	A	I	V	D	Y	K	T	T	K	N	V	L	A	A	I	P	N	R	T	F	A	K	I	N	P	G	E	V	I	P	L	I	T	-	-	-	N	H	N	I	L	-	-	-	K	P	L	I	G	Q	K	F	C	I	V	Y	T	N	S	L	D	-	E	N	T	Y	A	-	E	L	L	T	G	Y	-	-	-	A	P	V	S	P	I	V	I	A	R	T	H	T	A	L	I	F	L	-	G	K	P	T	T	S	R	R	D	V	Y	R	T	C	R	D	H	A	T	R	V	R	A	T	G	N
-	S	W	Q	T	Y	V	D	D	H	L	M	D	I	E	G	T	G	Q	H	L	T	S	A	A	I	F	G	T	-	-	D	G	T	V	W	A	K	S	A	-	-	S	F	P	E	F	K	P	N	E	I	D	A	I	I	K	E	F	N	E	A	G	Q	L	A	P	T	G	L	F	L	G	G	A	K	Y	M	V	I	Q	G	E	A	G	-	-	-	-	A	V	I	R	G	K	K	G	-	-	-	-	-	-	A	G	G	I	C	I	K	K	T	G	Q	A	M	V	F	G	I	Y	D	E	P	V	A	P	G	Q	C	N	M	V	V	E	R	L	G	D	Y	L	L	D	Q	G	M

Member	Chain	UniProtKB	GO term

									10										20										30										40										50										60										70										80										90										100										110										120										130										140
A	G	W	N	A	Y	I	D	-	N	L	M	A	D	G	-	-	-	-	T	C	Q	D	A	A	I	V	G	Y	K	D	S	P	S	V	W	A	A	V	P	G	K	T	F	V	N	I	T	P	A	E	V	G	V	L	V	G	-	-	K	D	R	S	S	F	Y	V	N	G	L	T	L	G	G	Q	K	C	S	V	I	R	D	S	L	L	Q	D	G	E	F	S	M	D	L	R	T	K	S	T	G	G	A	P	T	F	N	V	T	V	T	K	T	D	K	T	L	V	L	L	M	G	K	E	G	V	H	G	G	L	I	N	K	K	C	Y	E	M	A	S	H	L	R	R	S	Q	Y
-	S	W	Q	A	Y	V	D	T	S	L	L	G	T	G	-	-	-	-	K	I	D	R	A	A	I	V	S	R	-	-	A	G	D	S	W	A	A	S	A	-	-	G	F	-	N	L	S	P	Q	E	I	Q	G	L	A	A	G	F	Q	D	P	P	S	M	F	G	T	G	I	I	L	A	G	Q	K	Y	-	T	I	R	A	E	-	G	-	-	-	-	R	S	I	Y	G	K	L	Q	-	-	-	-	-	-	K	E	G	I	I	C	V	A	T	K	L	C	I	L	V	S	H	Y	P	E	T	T	L	P	G	E	A	A	K	I	T	E	A	L	A	D	Y	L	V	G	V	G	Y
A	E	W	H	K	I	I	E	-	D	I	S	K	N	N	-	-	-	-	K	F	E	D	A	A	I	V	D	Y	K	T	T	K	N	V	L	A	A	I	P	N	R	T	F	A	K	I	N	P	G	E	V	I	P	L	I	T	-	-	-	N	H	N	I	L	-	-	-	K	P	L	I	G	Q	K	F	C	I	V	Y	T	N	S	L	D	-	E	N	T	Y	A	-	E	L	L	T	G	Y	-	-	-	A	P	V	S	P	I	V	I	A	R	T	H	T	A	L	I	F	L	-	G	K	P	T	T	S	R	R	D	V	Y	R	T	C	R	D	H	A	T	R	V	R	A	T	G	N
-	S	W	Q	T	Y	V	D	D	H	L	M	D	I	E	G	T	G	Q	H	L	T	S	A	A	I	F	G	T	-	-	D	G	T	V	W	A	K	S	A	-	-	S	F	P	E	F	K	P	N	E	I	D	A	I	I	K	E	F	N	E	A	G	Q	L	A	P	T	G	L	F	L	G	G	A	K	Y	M	V	I	Q	G	E	A	G	-	-	-	-	A	V	I	R	G	K	K	G	-	-	-	-	-	-	A	G	G	I	C	I	K	K	T	G	Q	A	M	V	F	G	I	Y	D	E	P	V	A	P	G	Q	C	N	M	V	V	E	R	L	G	D	Y	L	L	D	Q	G	M

									10										20										30										40										50										60										70										80										90										100										110										120										130										140
A	G	W	N	A	Y	I	D	-	N	L	M	A	D	G	-	-	-	-	T	C	Q	D	A	A	I	V	G	Y	K	D	S	P	S	V	W	A	A	V	P	G	K	T	F	V	N	I	T	P	A	E	V	G	V	L	V	G	-	-	K	D	R	S	S	F	Y	V	N	G	L	T	L	G	G	Q	K	C	S	V	I	R	D	S	L	L	Q	D	G	E	F	S	M	D	L	R	T	K	S	T	G	G	A	P	T	F	N	V	T	V	T	K	T	D	K	T	L	V	L	L	M	G	K	E	G	V	H	G	G	L	I	N	K	K	C	Y	E	M	A	S	H	L	R	R	S	Q	Y
-	S	W	Q	A	Y	V	D	T	S	L	L	G	T	G	-	-	-	-	K	I	D	R	A	A	I	V	S	R	-	-	A	G	D	S	W	A	A	S	A	-	-	G	F	-	N	L	S	P	Q	E	I	Q	G	L	A	A	G	F	Q	D	P	P	S	M	F	G	T	G	I	I	L	A	G	Q	K	Y	-	T	I	R	A	E	-	G	-	-	-	-	R	S	I	Y	G	K	L	Q	-	-	-	-	-	-	K	E	G	I	I	C	V	A	T	K	L	C	I	L	V	S	H	Y	P	E	T	T	L	P	G	E	A	A	K	I	T	E	A	L	A	D	Y	L	V	G	V	G	Y
A	E	W	H	K	I	I	E	-	D	I	S	K	N	N	-	-	-	-	K	F	E	D	A	A	I	V	D	Y	K	T	T	K	N	V	L	A	A	I	P	N	R	T	F	A	K	I	N	P	G	E	V	I	P	L	I	T	-	-	-	N	H	N	I	L	-	-	-	K	P	L	I	G	Q	K	F	C	I	V	Y	T	N	S	L	D	-	E	N	T	Y	A	-	E	L	L	T	G	Y	-	-	-	A	P	V	S	P	I	V	I	A	R	T	H	T	A	L	I	F	L	-	G	K	P	T	T	S	R	R	D	V	Y	R	T	C	R	D	H	A	T	R	V	R	A	T	G	N
-	S	W	Q	T	Y	V	D	D	H	L	M	D	I	E	G	T	G	Q	H	L	T	S	A	A	I	F	G	T	-	-	D	G	T	V	W	A	K	S	A	-	-	S	F	P	E	F	K	P	N	E	I	D	A	I	I	K	E	F	N	E	A	G	Q	L	A	P	T	G	L	F	L	G	G	A	K	Y	M	V	I	Q	G	E	A	G	-	-	-	-	A	V	I	R	G	K	K	G	-	-	-	-	-	-	A	G	G	I	C	I	K	K	T	G	Q	A	M	V	F	G	I	Y	D	E	P	V	A	P	G	Q	C	N	M	V	V	E	R	L	G	D	Y	L	L	D	Q	G	M

									10										20										30										40										50										60										70										80										90										100										110										120										130										140
A	G	W	N	A	Y	I	D	-	N	L	M	A	D	G	-	-	-	-	T	C	Q	D	A	A	I	V	G	Y	K	D	S	P	S	V	W	A	A	V	P	G	K	T	F	V	N	I	T	P	A	E	V	G	V	L	V	G	-	-	K	D	R	S	S	F	Y	V	N	G	L	T	L	G	G	Q	K	C	S	V	I	R	D	S	L	L	Q	D	G	E	F	S	M	D	L	R	T	K	S	T	G	G	A	P	T	F	N	V	T	V	T	K	T	D	K	T	L	V	L	L	M	G	K	E	G	V	H	G	G	L	I	N	K	K	C	Y	E	M	A	S	H	L	R	R	S	Q	Y
-	S	W	Q	A	Y	V	D	T	S	L	L	G	T	G	-	-	-	-	K	I	D	R	A	A	I	V	S	R	-	-	A	G	D	S	W	A	A	S	A	-	-	G	F	-	N	L	S	P	Q	E	I	Q	G	L	A	A	G	F	Q	D	P	P	S	M	F	G	T	G	I	I	L	A	G	Q	K	Y	-	T	I	R	A	E	-	G	-	-	-	-	R	S	I	Y	G	K	L	Q	-	-	-	-	-	-	K	E	G	I	I	C	V	A	T	K	L	C	I	L	V	S	H	Y	P	E	T	T	L	P	G	E	A	A	K	I	T	E	A	L	A	D	Y	L	V	G	V	G	Y
A	E	W	H	K	I	I	E	-	D	I	S	K	N	N	-	-	-	-	K	F	E	D	A	A	I	V	D	Y	K	T	T	K	N	V	L	A	A	I	P	N	R	T	F	A	K	I	N	P	G	E	V	I	P	L	I	T	-	-	-	N	H	N	I	L	-	-	-	K	P	L	I	G	Q	K	F	C	I	V	Y	T	N	S	L	D	-	E	N	T	Y	A	-	E	L	L	T	G	Y	-	-	-	A	P	V	S	P	I	V	I	A	R	T	H	T	A	L	I	F	L	-	G	K	P	T	T	S	R	R	D	V	Y	R	T	C	R	D	H	A	T	R	V	R	A	T	G	N
-	S	W	Q	T	Y	V	D	D	H	L	M	D	I	E	G	T	G	Q	H	L	T	S	A	A	I	F	G	T	-	-	D	G	T	V	W	A	K	S	A	-	-	S	F	P	E	F	K	P	N	E	I	D	A	I	I	K	E	F	N	E	A	G	Q	L	A	P	T	G	L	F	L	G	G	A	K	Y	M	V	I	Q	G	E	A	G	-	-	-	-	A	V	I	R	G	K	K	G	-	-	-	-	-	-	A	G	G	I	C	I	K	K	T	G	Q	A	M	V	F	G	I	Y	D	E	P	V	A	P	G	Q	C	N	M	V	V	E	R	L	G	D	Y	L	L	D	Q	G	M