PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1jhsa-  (  31 )    mnNkeveLyggaItTVVPpgFidastlrevpd-----tqavYvNsRrdee
d1tu1a1  (   1 )                mtlyrlhea-----dleipdawqdqsinifklpasg--
d1v2ba-  (  17 )                dftyngdgFLqiPskWnpnkevypgQvLrfedn-----
d2i8ga-  (   2 )                   vhDsalpfda--lpppqgreGfeeÇpYLdsqwvad
                                                           bbbbb      

                             60        70        80        90        100 
d1jhsa-  (  76 )    efeDgLat------nEsIiVdlle------tvdksdlkeAWqfHVedlTe
d1tu1a1  (  32 )    -----pAr------eAsfvisrda------sQgdapfadYVarqlenaek
d1v2ba-  (  53 )    -----fda------tSnVIVAitp------tdksItdfgspeqFlsqVdy
d2i8ga-  (  36 )    tNgqrtgqgvdtrFdtpAÇVFwSypeapQatVVrhpseeeAirvVdwAAp
                                    bbbbbbb              aaaaaaaaaaa  

                             110       120       130       140       150 
d1jhsa-  ( 114 )    lngTtkwealqedtvq-qgtkFTGLVmevankwgkpdlaqtvViGVALIr
d1tu1a1  (  65 )    --qlpgFklhkrwdinihghaAVlLdYqwqre------grdlMlrqVFIe
d1v2ba-  (  87 )    Llavaianvletstaevgg-yYyLsIlTrt---------gGkhQlVTATV
d2i8ga-  (  89 )    idttepAeepd---------gWsggraghe----------egAvYAVqk-
                         bbbbbbbbb       bbbbbbbb            bbbbbbbb 

                             160       170       180       190       200 
d1jhsa-  ( 163 )    ltqfdtDVVISInVpLtkeeasqAsnkelPaRChaVYqLLqeMVrkFhvv
d1tu1a1  ( 107 )    r--rpaVliTtLttt--------------padlphHepawkqamqtlvPr
d1v2ba-  ( 152 )    n--dgkLYICKAqAg--dkrwfk-----------gakkfVenTAtsFsla
d2i8ga-  ( 119 )    ---gpvAVVVwSnqq-----------------qslkAelAkeAIarlgl 
                         bbbbbbbbb                   aaaaaaaaaaaa     

                          
d1jhsa-  ( 213 )    dtslfa
d1tu1a1  ( 141 )    pt    
d1v2ba-                   
d2i8ga-

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1jhsa- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1jhsa- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Ran-binding protein mog1p	Ran-binding protein mog1p	Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]	view
d1tu1a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1tu1a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein PA0094	PA0094-like	Pseudomonas aeruginosa [TaxId: 287]	view
d1v2ba- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1v2ba- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Oxygen-evolving enhancer protein PsbP	PsbP-like	Tobacco (Nicotiana tabacum) [TaxId: 4097]	view
d2i8ga- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2i8ga- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein DIP2269	DIP2269-like	Corynebacterium diphtheriae [TaxId: 1717]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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-	-	-	-	-	-	-	-	-	-	-	-	D	F	T	Y	N	G	D	G	F	L	Q	I	P	S	K	W	N	P	N	K	E	V	Y	P	G	Q	V	L	R	F	E	D	N	-	-	-	-	-	-	-	-	-	-	F	D	A	-	-	-	-	-	-	T	S	N	V	I	V	A	I	T	P	-	-	-	-	-	-	T	D	K	S	I	T	D	F	G	S	P	E	Q	F	L	S	Q	V	D	Y	L	L	A	V	A	I	A	N	V	L	E	T	S	T	A	E	V	G	G	-	Y	Y	Y	L	S	I	L	T	R	T	-	-	-	-	-	-	-	-	-	G	G	K	H	Q	L	V	T	A	T	V	N	-	-	D	G	K	L	Y	I	C	K	A	Q	A	G	-	-	D	K	R	W	F	K	-	-	-	-	-	-	-	-	-	-	-	G	A	K	K	F	V	E	N	T	A	T	S	F	S	L	A	-	-	-	-	-	-
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Member	Chain	UniProtKB	GO term
d1v2ba_	A	P18212	GO:0005509
d1v2ba_	A	P18212	GO:0009523
d1v2ba_	A	P18212	GO:0009654
d1v2ba_	A	P18212	GO:0015979
d1v2ba_	A	P18212	GO:0019898

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M	N	N	K	E	V	E	L	Y	G	G	A	I	T	T	V	V	P	P	G	F	I	D	A	S	T	L	R	E	V	P	D	-	-	-	-	-	T	Q	A	V	Y	V	N	S	R	R	D	E	E	E	F	E	D	G	L	A	T	-	-	-	-	-	-	N	E	S	I	I	V	D	L	L	E	-	-	-	-	-	-	T	V	D	K	S	D	L	K	E	A	W	Q	F	H	V	E	D	L	T	E	L	N	G	T	T	K	W	E	A	L	Q	E	D	T	V	Q	-	Q	G	T	K	F	T	G	L	V	M	E	V	A	N	K	W	G	K	P	D	L	A	Q	T	V	V	I	G	V	A	L	I	R	L	T	Q	F	D	T	D	V	V	I	S	I	N	V	P	L	T	K	E	E	A	S	Q	A	S	N	K	E	L	P	A	R	C	H	A	V	Y	Q	L	L	Q	E	M	V	R	K	F	H	V	V	D	T	S	L	F	A
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