PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1qtsa2  ( 825 )    fFqptemasqdFfqrwkqlsnpqqevqnifkAkhpMdteiTkakIigf-g
d1r4xa2  ( 763 )    hiqkvmkl--nFeaawdev-gdefekeetftlstiktLeeAVgnivkfLg
d2g30a2  ( 825 )    lfvdGkMerqvFlatwkdI-pnenelqfqIk-eChlnAdtVsskLqnn-n
                               aaaaa         bbbbb       aaaaaaaaaa   

                             60        70        80        90        100 
d1qtsa2  ( 874 )    SAlLeeVdpn----p-anfVGAGiihtkttqIgClLrLepnl-qaqmYrL
d1r4xa2  ( 810 )    MhpCersdkVpdnknthtLlLAGvFr---gghdILVrSrLllldtVtMqV
d2g30a2  ( 873 )    VytIakrnve----gqdmLyQSLkl--tn-giwILAeLriqp-gnpnYtL
                     bb               bbbbbb        bbbbbbbb       bbb

                             110       120 
d1qtsa2  ( 918 )    TLrTskdtvSqrlCelLseqF  
d1r4xa2  ( 857 )    TArSleelPVdiIlasv      
d2g30a2  ( 915 )    SLKCrapevSqyIyqvYdsiLkn
                    bbbb     aaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1qtsa2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1qtsa2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Alpa-adaptin AP2, C-terminal subdomain	Clathrin adaptor appendage, alpha and beta chain-specific domain	Mouse (Mus musculus) [TaxId: 10090]	view
d1r4xa2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1r4xa2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Coatomer gamma subunit, C-terminal subdomain	Coatomer appendage domain	Human (Homo sapiens) [TaxId: 9606]	view
d2g30a2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2g30a2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Beta2-adaptin AP2, C-terminal subdomain	Clathrin adaptor appendage, alpha and beta chain-specific domain	Human (Homo sapiens) [TaxId: 9606]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60										70										80										90										100										110										120
F	F	Q	P	T	E	M	A	S	Q	D	F	F	Q	R	W	K	Q	L	S	N	P	Q	Q	E	V	Q	N	I	F	K	A	K	H	P	M	D	T	E	I	T	K	A	K	I	I	G	F	-	G	S	A	L	L	E	E	V	D	P	N	-	-	-	-	P	-	A	N	F	V	G	A	G	I	I	H	T	K	T	T	Q	I	G	C	L	L	R	L	E	P	N	L	-	Q	A	Q	M	Y	R	L	T	L	R	T	S	K	D	T	V	S	Q	R	L	C	E	L	L	S	E	Q	F	-	-
H	I	Q	K	V	M	K	L	-	-	N	F	E	A	A	W	D	E	V	-	G	D	E	F	E	K	E	E	T	F	T	L	S	T	I	K	T	L	E	E	A	V	G	N	I	V	K	F	L	G	M	H	P	C	E	R	S	D	K	V	P	D	N	K	N	T	H	T	L	L	L	A	G	V	F	R	-	-	-	G	G	H	D	I	L	V	R	S	R	L	L	L	L	D	T	V	T	M	Q	V	T	A	R	S	L	E	E	L	P	V	D	I	I	L	A	S	V	-	-	-	-	-	-
L	F	V	D	G	K	M	E	R	Q	V	F	L	A	T	W	K	D	I	-	P	N	E	N	E	L	Q	F	Q	I	K	-	E	C	H	L	N	A	D	T	V	S	S	K	L	Q	N	N	-	N	V	Y	T	I	A	K	R	N	V	E	-	-	-	-	G	Q	D	M	L	Y	Q	S	L	K	L	-	-	T	N	-	G	I	W	I	L	A	E	L	R	I	Q	P	-	G	N	P	N	Y	T	L	S	L	K	C	R	A	P	E	V	S	Q	Y	I	Y	Q	V	Y	D	S	I	L	K	N

Member	Chain	UniProtKB	GO term
d1qtsa2	A	P17427	GO:0006886
d1qtsa2	A	P17427	GO:0016192
d1qtsa2	A	P17427	GO:0030117
d1qtsa2	A	P17427	GO:0030131
d1qtsa2	A	P17427	GO:0006886
d1qtsa2	A	P17427	GO:0016192
d1qtsa2	A	P17427	GO:0030117
d1qtsa2	A	P17427	GO:0030131
d1r4xa2	A	Q9Y678	GO:0005198
d1r4xa2	A	Q9Y678	GO:0006886
d1r4xa2	A	Q9Y678	GO:0016192
d1r4xa2	A	Q9Y678	GO:0030117
d1r4xa2	A	Q9Y678	GO:0030126
d1r4xa2	A	Q9Y678	GO:0005198
d1r4xa2	A	Q9Y678	GO:0006886
d1r4xa2	A	Q9Y678	GO:0016192
d1r4xa2	A	Q9Y678	GO:0030117
d1r4xa2	A	Q9Y678	GO:0030126
d2g30a2	A	P63010	GO:0006886
d2g30a2	A	P63010	GO:0016192
d2g30a2	A	P63010	GO:0030117
d2g30a2	A	P63010	GO:0030131
d2g30a2	A	Q5SW96	GO:0006886
d2g30a2	A	Q5SW96	GO:0016192
d2g30a2	A	Q5SW96	GO:0030117
d2g30a2	A	Q5SW96	GO:0030131
d2g30a2	A	P63010	GO:0006886
d2g30a2	A	P63010	GO:0016192
d2g30a2	A	P63010	GO:0030117
d2g30a2	A	P63010	GO:0030131
d2g30a2	A	Q5SW96	GO:0006886
d2g30a2	A	Q5SW96	GO:0016192
d2g30a2	A	Q5SW96	GO:0030117
d2g30a2	A	Q5SW96	GO:0030131

									10										20										30										40										50										60										70										80										90										100										110										120
F	F	Q	P	T	E	M	A	S	Q	D	F	F	Q	R	W	K	Q	L	S	N	P	Q	Q	E	V	Q	N	I	F	K	A	K	H	P	M	D	T	E	I	T	K	A	K	I	I	G	F	-	G	S	A	L	L	E	E	V	D	P	N	-	-	-	-	P	-	A	N	F	V	G	A	G	I	I	H	T	K	T	T	Q	I	G	C	L	L	R	L	E	P	N	L	-	Q	A	Q	M	Y	R	L	T	L	R	T	S	K	D	T	V	S	Q	R	L	C	E	L	L	S	E	Q	F	-	-
H	I	Q	K	V	M	K	L	-	-	N	F	E	A	A	W	D	E	V	-	G	D	E	F	E	K	E	E	T	F	T	L	S	T	I	K	T	L	E	E	A	V	G	N	I	V	K	F	L	G	M	H	P	C	E	R	S	D	K	V	P	D	N	K	N	T	H	T	L	L	L	A	G	V	F	R	-	-	-	G	G	H	D	I	L	V	R	S	R	L	L	L	L	D	T	V	T	M	Q	V	T	A	R	S	L	E	E	L	P	V	D	I	I	L	A	S	V	-	-	-	-	-	-
L	F	V	D	G	K	M	E	R	Q	V	F	L	A	T	W	K	D	I	-	P	N	E	N	E	L	Q	F	Q	I	K	-	E	C	H	L	N	A	D	T	V	S	S	K	L	Q	N	N	-	N	V	Y	T	I	A	K	R	N	V	E	-	-	-	-	G	Q	D	M	L	Y	Q	S	L	K	L	-	-	T	N	-	G	I	W	I	L	A	E	L	R	I	Q	P	-	G	N	P	N	Y	T	L	S	L	K	C	R	A	P	E	V	S	Q	Y	I	Y	Q	V	Y	D	S	I	L	K	N

									10										20										30										40										50										60										70										80										90										100										110										120
F	F	Q	P	T	E	M	A	S	Q	D	F	F	Q	R	W	K	Q	L	S	N	P	Q	Q	E	V	Q	N	I	F	K	A	K	H	P	M	D	T	E	I	T	K	A	K	I	I	G	F	-	G	S	A	L	L	E	E	V	D	P	N	-	-	-	-	P	-	A	N	F	V	G	A	G	I	I	H	T	K	T	T	Q	I	G	C	L	L	R	L	E	P	N	L	-	Q	A	Q	M	Y	R	L	T	L	R	T	S	K	D	T	V	S	Q	R	L	C	E	L	L	S	E	Q	F	-	-
H	I	Q	K	V	M	K	L	-	-	N	F	E	A	A	W	D	E	V	-	G	D	E	F	E	K	E	E	T	F	T	L	S	T	I	K	T	L	E	E	A	V	G	N	I	V	K	F	L	G	M	H	P	C	E	R	S	D	K	V	P	D	N	K	N	T	H	T	L	L	L	A	G	V	F	R	-	-	-	G	G	H	D	I	L	V	R	S	R	L	L	L	L	D	T	V	T	M	Q	V	T	A	R	S	L	E	E	L	P	V	D	I	I	L	A	S	V	-	-	-	-	-	-
L	F	V	D	G	K	M	E	R	Q	V	F	L	A	T	W	K	D	I	-	P	N	E	N	E	L	Q	F	Q	I	K	-	E	C	H	L	N	A	D	T	V	S	S	K	L	Q	N	N	-	N	V	Y	T	I	A	K	R	N	V	E	-	-	-	-	G	Q	D	M	L	Y	Q	S	L	K	L	-	-	T	N	-	G	I	W	I	L	A	E	L	R	I	Q	P	-	G	N	P	N	Y	T	L	S	L	K	C	R	A	P	E	V	S	Q	Y	I	Y	Q	V	Y	D	S	I	L	K	N

									10										20										30										40										50										60										70										80										90										100										110										120
F	F	Q	P	T	E	M	A	S	Q	D	F	F	Q	R	W	K	Q	L	S	N	P	Q	Q	E	V	Q	N	I	F	K	A	K	H	P	M	D	T	E	I	T	K	A	K	I	I	G	F	-	G	S	A	L	L	E	E	V	D	P	N	-	-	-	-	P	-	A	N	F	V	G	A	G	I	I	H	T	K	T	T	Q	I	G	C	L	L	R	L	E	P	N	L	-	Q	A	Q	M	Y	R	L	T	L	R	T	S	K	D	T	V	S	Q	R	L	C	E	L	L	S	E	Q	F	-	-
H	I	Q	K	V	M	K	L	-	-	N	F	E	A	A	W	D	E	V	-	G	D	E	F	E	K	E	E	T	F	T	L	S	T	I	K	T	L	E	E	A	V	G	N	I	V	K	F	L	G	M	H	P	C	E	R	S	D	K	V	P	D	N	K	N	T	H	T	L	L	L	A	G	V	F	R	-	-	-	G	G	H	D	I	L	V	R	S	R	L	L	L	L	D	T	V	T	M	Q	V	T	A	R	S	L	E	E	L	P	V	D	I	I	L	A	S	V	-	-	-	-	-	-
L	F	V	D	G	K	M	E	R	Q	V	F	L	A	T	W	K	D	I	-	P	N	E	N	E	L	Q	F	Q	I	K	-	E	C	H	L	N	A	D	T	V	S	S	K	L	Q	N	N	-	N	V	Y	T	I	A	K	R	N	V	E	-	-	-	-	G	Q	D	M	L	Y	Q	S	L	K	L	-	-	T	N	-	G	I	W	I	L	A	E	L	R	I	Q	P	-	G	N	P	N	Y	T	L	S	L	K	C	R	A	P	E	V	S	Q	Y	I	Y	Q	V	Y	D	S	I	L	K	N