PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1cbya-  (  19 )    csapiirkpfkhivltvpssdldnFntvfyVqpqyinqAlhLanAFqgAI
d1pp0a-  (   5 )                          nvFqpvdqLpedLipSsiqVlkFSgkyl
                                             bbbb   333aaaaaaaaaa     

                             60        70        80        90        100 
d1cbya-  (  69 )    dpl--nlnFnfekAlqIAngIp--nSaivktlnqsvIqqtveIsvMVeqL
d1pp0a-  (  33 )    kleqdkayFdwpgFktaIdnytgedLsfdkydqstinqqsqeVgaMVdkI
                              aaaaaaaa       bbbbbbbbbbbbbbbbbaaaaaaaa

                             110       120       130       140       150 
d1cbya-  ( 115 )    kkiIqeVLglvInstsFwnsVeatIkgTFtnLdtqideawIfwhslsa-h
d1pp0a-  (  83 )    AkfLhdaFaaVvd----lskLaaiIlnTFtnLeeesssgfLqfntnnvkk
                    aaaaaaa          aaaaaaaaaa             bbbb      

                             160       170       180       190       200 
d1cbya-  ( 164 )    nTsYyYNILFSIQNedTgavMAVLPLAFeVsVdv-ekqkVlfftikdsar
d1pp0a-  ( 129 )    nSsWeYRVLfSvpfap--syFySLVTTIlItAdieektgWwgLtsstkkn
                     bbbbbbbbbbb       bbbbbbbbbbbbb               bbb

                             210       220       230 
d1cbya-  ( 213 )    YeVkMKALTLvqalhssnapivdifnvnnynly
d1pp0a-  ( 180 )    FaVqIdALELvVkkgFk-Ap             
                    bbbbbbbbbbbbb

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1cbya- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1cbya- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Mosquitocidal delta-endotoxin CytB	CytB endotoxin-like	Bacillus thuringiensis, strain Kyushuensis [TaxId: 1428]		view
d1pp0a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1pp0a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Volvatoxin A2	CytB endotoxin-like	Volvariella volvacea, different isoforms [TaxId: 36659]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1cbya_	A	Q04470	GO:0005576
d1cbya_	A	Q04470	GO:0030435
d1cbya_	A	Q04470	GO:0035821
d1cbya_	A	Q04470	GO:0090729
d1pp0a_	A	Q6USC4	GO:0005576

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