PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2hbaa1  (   1 )    mkViFlkdvkgmgkkgeiknvadgyAnnfLfkqglAieAtp-anlkalea
d3bsua1  (  27 )    mfyAVrr-----GrktgVfltwneCraqVdrfpaarfkkfatedeAwafV
                     bbbb            bb   aaaaaa       bbb    aaaaaaaa

                       
d2hbaa1  (  50 )    qkq
d3bsua1  (  72 )    rk 
                    a

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d2hbaa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2hbaa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Ribosomal protein L9 N-domain	Ribosomal protein L9 N-domain	Bacillus stearothermophilus [TaxId: 1422]		view
d3bsua1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3bsua1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Human (Homo sapiens) [TaxId: 9606]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50
M	K	V	I	F	L	K	D	V	K	G	M	G	K	K	G	E	I	K	N	V	A	D	G	Y	A	N	N	F	L	F	K	Q	G	L	A	I	E	A	T	P	-	A	N	L	K	A	L	E	A	Q	K	Q
M	F	Y	A	V	R	R	-	-	-	-	-	G	R	K	T	G	V	F	L	T	W	N	E	C	R	A	Q	V	D	R	F	P	A	A	R	F	K	K	F	A	T	E	D	E	A	W	A	F	V	R	K	-

Member	Chain	UniProtKB	GO term
d2hbaa1	A	P02417	GO:0003735
d2hbaa1	A	P02417	GO:0005840
d2hbaa1	A	P02417	GO:0006412

									10										20										30										40										50
M	K	V	I	F	L	K	D	V	K	G	M	G	K	K	G	E	I	K	N	V	A	D	G	Y	A	N	N	F	L	F	K	Q	G	L	A	I	E	A	T	P	-	A	N	L	K	A	L	E	A	Q	K	Q
M	F	Y	A	V	R	R	-	-	-	-	-	G	R	K	T	G	V	F	L	T	W	N	E	C	R	A	Q	V	D	R	F	P	A	A	R	F	K	K	F	A	T	E	D	E	A	W	A	F	V	R	K	-

									10										20										30										40										50
M	K	V	I	F	L	K	D	V	K	G	M	G	K	K	G	E	I	K	N	V	A	D	G	Y	A	N	N	F	L	F	K	Q	G	L	A	I	E	A	T	P	-	A	N	L	K	A	L	E	A	Q	K	Q
M	F	Y	A	V	R	R	-	-	-	-	-	G	R	K	T	G	V	F	L	T	W	N	E	C	R	A	Q	V	D	R	F	P	A	A	R	F	K	K	F	A	T	E	D	E	A	W	A	F	V	R	K	-

									10										20										30										40										50
M	K	V	I	F	L	K	D	V	K	G	M	G	K	K	G	E	I	K	N	V	A	D	G	Y	A	N	N	F	L	F	K	Q	G	L	A	I	E	A	T	P	-	A	N	L	K	A	L	E	A	Q	K	Q
M	F	Y	A	V	R	R	-	-	-	-	-	G	R	K	T	G	V	F	L	T	W	N	E	C	R	A	Q	V	D	R	F	P	A	A	R	F	K	K	F	A	T	E	D	E	A	W	A	F	V	R	K	-