PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1diva1  (  56 )    rqaaeelanakklkeqLekl-tVtipakAgeggrLfgsitskqIaesLqa
d2qamh1  (  59 )       aevlaaanaraekinaletVtiaskagdegkLfgsIgtrdIAdaVta
                                aaaa                        aaaaaaa   

                             60        70        80        90     
d1diva1  ( 105 )    qhglkLdkrkIela-dairalgytnVpVkLhpeVtAtLkVhVteqk
d2qamh1  ( 106 )    a-gvevaksevrlpngvlrttgeheVsFqVhsevfAkviVnVvae

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1diva1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1diva1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Ribosomal protein L9 C-domain	Ribosomal protein L9 C-domain	Bacillus stearothermophilus [TaxId: 1422]		view
d2qamh1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2qamh1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Ribosomal protein L9 C-domain	Ribosomal protein L9 C-domain	Escherichia coli [TaxId: 562]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60										70										80										90
R	Q	A	A	E	E	L	A	N	A	K	K	L	K	E	Q	L	E	K	L	-	T	V	T	I	P	A	K	A	G	E	G	G	R	L	F	G	S	I	T	S	K	Q	I	A	E	S	L	Q	A	Q	H	G	L	K	L	D	K	R	K	I	E	L	A	-	D	A	I	R	A	L	G	Y	T	N	V	P	V	K	L	H	P	E	V	T	A	T	L	K	V	H	V	T	E	Q	K
-	-	-	A	E	V	L	A	A	A	N	A	R	A	E	K	I	N	A	L	E	T	V	T	I	A	S	K	A	G	D	E	G	K	L	F	G	S	I	G	T	R	D	I	A	D	A	V	T	A	A	-	G	V	E	V	A	K	S	E	V	R	L	P	N	G	V	L	R	T	T	G	E	H	E	V	S	F	Q	V	H	S	E	V	F	A	K	V	I	V	N	V	V	A	E	-

Member	Chain	UniProtKB	GO term
d1diva1	A	P02417	GO:0003735
d1diva1	A	P02417	GO:0005840
d1diva1	A	P02417	GO:0006412
d1diva1	A	P02417	GO:0019843
d1diva1	A	P02417	GO:0022625
d1diva1	A	P02417	GO:1990904

									10										20										30										40										50										60										70										80										90
R	Q	A	A	E	E	L	A	N	A	K	K	L	K	E	Q	L	E	K	L	-	T	V	T	I	P	A	K	A	G	E	G	G	R	L	F	G	S	I	T	S	K	Q	I	A	E	S	L	Q	A	Q	H	G	L	K	L	D	K	R	K	I	E	L	A	-	D	A	I	R	A	L	G	Y	T	N	V	P	V	K	L	H	P	E	V	T	A	T	L	K	V	H	V	T	E	Q	K
-	-	-	A	E	V	L	A	A	A	N	A	R	A	E	K	I	N	A	L	E	T	V	T	I	A	S	K	A	G	D	E	G	K	L	F	G	S	I	G	T	R	D	I	A	D	A	V	T	A	A	-	G	V	E	V	A	K	S	E	V	R	L	P	N	G	V	L	R	T	T	G	E	H	E	V	S	F	Q	V	H	S	E	V	F	A	K	V	I	V	N	V	V	A	E	-

									10										20										30										40										50										60										70										80										90
R	Q	A	A	E	E	L	A	N	A	K	K	L	K	E	Q	L	E	K	L	-	T	V	T	I	P	A	K	A	G	E	G	G	R	L	F	G	S	I	T	S	K	Q	I	A	E	S	L	Q	A	Q	H	G	L	K	L	D	K	R	K	I	E	L	A	-	D	A	I	R	A	L	G	Y	T	N	V	P	V	K	L	H	P	E	V	T	A	T	L	K	V	H	V	T	E	Q	K
-	-	-	A	E	V	L	A	A	A	N	A	R	A	E	K	I	N	A	L	E	T	V	T	I	A	S	K	A	G	D	E	G	K	L	F	G	S	I	G	T	R	D	I	A	D	A	V	T	A	A	-	G	V	E	V	A	K	S	E	V	R	L	P	N	G	V	L	R	T	T	G	E	H	E	V	S	F	Q	V	H	S	E	V	F	A	K	V	I	V	N	V	V	A	E	-

									10										20										30										40										50										60										70										80										90
R	Q	A	A	E	E	L	A	N	A	K	K	L	K	E	Q	L	E	K	L	-	T	V	T	I	P	A	K	A	G	E	G	G	R	L	F	G	S	I	T	S	K	Q	I	A	E	S	L	Q	A	Q	H	G	L	K	L	D	K	R	K	I	E	L	A	-	D	A	I	R	A	L	G	Y	T	N	V	P	V	K	L	H	P	E	V	T	A	T	L	K	V	H	V	T	E	Q	K
-	-	-	A	E	V	L	A	A	A	N	A	R	A	E	K	I	N	A	L	E	T	V	T	I	A	S	K	A	G	D	E	G	K	L	F	G	S	I	G	T	R	D	I	A	D	A	V	T	A	A	-	G	V	E	V	A	K	S	E	V	R	L	P	N	G	V	L	R	T	T	G	E	H	E	V	S	F	Q	V	H	S	E	V	F	A	K	V	I	V	N	V	V	A	E	-