PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1dt9a3  (   5 )    psaadrnveiwkIkkliksLeaarGngtSMISLIIPpkdqisrVakmLad
d4af1a1  (   7 )    vp--sedrrkyeFrkvieeLkdyeGsgtQLVTIYIPpdkqIsdVvahVtq
                         aaaaaaaaaaaaaaaa        bbbbbb     aaaaaaaaaa

                             60        70        80        90        100 
d1dt9a3  (  55 )    efgtasniksrvnrlsvlgAItsVqqrLklyn-kVppnGLVVYCgtivte
d4af1a1  (  55 )    ehseAsnikskqtrtnVqdALtsIkdrLryydtfPpdnGMVVFSGAVdsg
                    aaaa       aaaaaaaaaaaaaaaa            bbbbbbbbb  

                             110       120       130       140 
d1dt9a3  ( 104 )    egkekkvnidfe-PfkpintslylcdnkFhTeaLtallsd
d4af1a1  ( 105 )    ggrtdmvteVlesPPqpIesfryhcdsaFlTepLaemLgd
                       bbbbbbbb          bbbbb

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1dt9a3 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1dt9a3 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1	N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1	Human (Homo sapiens) [TaxId: 9606]		view
d4af1a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4af1a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Halobacterium salinarum [TaxId: 478009]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Show entries

Search:

Member	Chain	UniProtKB	GO term
d1dt9a3	A	P62495	GO:0000184
d1dt9a3	A	P62495	GO:0002184
d1dt9a3	A	P62495	GO:0003723
d1dt9a3	A	P62495	GO:0003747
d1dt9a3	A	P62495	GO:0004045
d1dt9a3	A	P62495	GO:0005515
d1dt9a3	A	P62495	GO:0005634
d1dt9a3	A	P62495	GO:0005737
d1dt9a3	A	P62495	GO:0005829
d1dt9a3	A	P62495	GO:0006412

Showing 1 to 10 of 76 entries

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