PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d4hwxa1  (   1 )    sahgpSaMvFtViqgsGeptdtvlrattLsçaytAegtHpapraAÇdaLn
d6i0ia-  (   3 )      yapSaLvLtVGqgdkaasAgvqravtLnÇmpkpsgtHpdargAÇdqLr
                          bbbbbbbb       bbbbbbbbb           aaaaaaaaa

                             60        70        80        90        100 
d4hwxa1  (  51 )    aTdGeLnrLlaapdpslvçpmyfdpVTVtAdgvLngrrvawkhtFsNtçv
d6i0ia-  (  51 )    aasGnFaeITki-ksgtaÇtkewnpfVVtAegvwegqrvkyehtFaNpçe
                    a                        bbbbbbbbb  bbbbbbbbb  aaa

                             110 
d4hwxa1  ( 101 )    msanLnsnpVYaf
d6i0ia-  ( 100 )    mkagk--gtVFef
                    aaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d4hwxa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4hwxa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Streptomyces caespitosus [TaxId: 53502]		view
d6i0ia- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d6i0ia- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Streptomyces mobaraensis [TaxId: 1223523]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60										70										80										90										100										110
S	A	H	G	P	S	A	M	V	F	T	V	I	Q	G	S	G	E	P	T	D	T	V	L	R	A	T	T	L	S	C	A	Y	T	A	E	G	T	H	P	A	P	R	A	A	C	D	A	L	N	A	T	D	G	E	L	N	R	L	L	A	A	P	D	P	S	L	V	C	P	M	Y	F	D	P	V	T	V	T	A	D	G	V	L	N	G	R	R	V	A	W	K	H	T	F	S	N	T	C	V	M	S	A	N	L	N	S	N	P	V	Y	A	F
-	-	Y	A	P	S	A	L	V	L	T	V	G	Q	G	D	K	A	A	S	A	G	V	Q	R	A	V	T	L	N	C	M	P	K	P	S	G	T	H	P	D	A	R	G	A	C	D	Q	L	R	A	A	S	G	N	F	A	E	I	T	K	I	-	K	S	G	T	A	C	T	K	E	W	N	P	F	V	V	T	A	E	G	V	W	E	G	Q	R	V	K	Y	E	H	T	F	A	N	P	C	E	M	K	A	G	K	-	-	G	T	V	F	E	F

Member	Chain	UniProtKB	GO term

									10										20										30										40										50										60										70										80										90										100										110
S	A	H	G	P	S	A	M	V	F	T	V	I	Q	G	S	G	E	P	T	D	T	V	L	R	A	T	T	L	S	C	A	Y	T	A	E	G	T	H	P	A	P	R	A	A	C	D	A	L	N	A	T	D	G	E	L	N	R	L	L	A	A	P	D	P	S	L	V	C	P	M	Y	F	D	P	V	T	V	T	A	D	G	V	L	N	G	R	R	V	A	W	K	H	T	F	S	N	T	C	V	M	S	A	N	L	N	S	N	P	V	Y	A	F
-	-	Y	A	P	S	A	L	V	L	T	V	G	Q	G	D	K	A	A	S	A	G	V	Q	R	A	V	T	L	N	C	M	P	K	P	S	G	T	H	P	D	A	R	G	A	C	D	Q	L	R	A	A	S	G	N	F	A	E	I	T	K	I	-	K	S	G	T	A	C	T	K	E	W	N	P	F	V	V	T	A	E	G	V	W	E	G	Q	R	V	K	Y	E	H	T	F	A	N	P	C	E	M	K	A	G	K	-	-	G	T	V	F	E	F

									10										20										30										40										50										60										70										80										90										100										110
S	A	H	G	P	S	A	M	V	F	T	V	I	Q	G	S	G	E	P	T	D	T	V	L	R	A	T	T	L	S	C	A	Y	T	A	E	G	T	H	P	A	P	R	A	A	C	D	A	L	N	A	T	D	G	E	L	N	R	L	L	A	A	P	D	P	S	L	V	C	P	M	Y	F	D	P	V	T	V	T	A	D	G	V	L	N	G	R	R	V	A	W	K	H	T	F	S	N	T	C	V	M	S	A	N	L	N	S	N	P	V	Y	A	F
-	-	Y	A	P	S	A	L	V	L	T	V	G	Q	G	D	K	A	A	S	A	G	V	Q	R	A	V	T	L	N	C	M	P	K	P	S	G	T	H	P	D	A	R	G	A	C	D	Q	L	R	A	A	S	G	N	F	A	E	I	T	K	I	-	K	S	G	T	A	C	T	K	E	W	N	P	F	V	V	T	A	E	G	V	W	E	G	Q	R	V	K	Y	E	H	T	F	A	N	P	C	E	M	K	A	G	K	-	-	G	T	V	F	E	F

									10										20										30										40										50										60										70										80										90										100										110
S	A	H	G	P	S	A	M	V	F	T	V	I	Q	G	S	G	E	P	T	D	T	V	L	R	A	T	T	L	S	C	A	Y	T	A	E	G	T	H	P	A	P	R	A	A	C	D	A	L	N	A	T	D	G	E	L	N	R	L	L	A	A	P	D	P	S	L	V	C	P	M	Y	F	D	P	V	T	V	T	A	D	G	V	L	N	G	R	R	V	A	W	K	H	T	F	S	N	T	C	V	M	S	A	N	L	N	S	N	P	V	Y	A	F
-	-	Y	A	P	S	A	L	V	L	T	V	G	Q	G	D	K	A	A	S	A	G	V	Q	R	A	V	T	L	N	C	M	P	K	P	S	G	T	H	P	D	A	R	G	A	C	D	Q	L	R	A	A	S	G	N	F	A	E	I	T	K	I	-	K	S	G	T	A	C	T	K	E	W	N	P	F	V	V	T	A	E	G	V	W	E	G	Q	R	V	K	Y	E	H	T	F	A	N	P	C	E	M	K	A	G	K	-	-	G	T	V	F	E	F