PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1ewfa1  (   2 )                                     npgvvvrisqkgldyaS
d1ewfa2  ( 218 )    etldvqmkgefyse---pPpfa-ppvmefpaahdrmvylglsdYffnTag
d4m4da2  ( 241 )    qvldvmfkgeifnrnhrspvatptptmsLpedskqmvyfaisdyafnias
                                                                      

                             60        70        80        90        100 
d1ewfa1  (  19 )    qqgtaalqkeLkrIIpdysdsFkil---------------------gkgh
d1ewfa2  ( 268 )    lvyqea-------gvlkmtLrddmIpkeSkfrLtTkfFGtfLpeVakk--
d4m4da2  ( 298 )    y--------------lnfsitddmLphdsgirLnTkaFrpFTpqIykk--
                                     bbbb                             

                             110       120       130       140       150 
d1ewfa1  (  51 )    YsFysMdIreFqLpssqismvpnvglkfsIsnAnIIsgkWkAqrflmsgn
d1ewfa2  ( 309 )    fpnmkIqI-hvsastpphLsVqptgLtfyp--avdVqAfAvlpnsalasL
d4m4da2  ( 332 )    ypdmkLEl-lGtvvsapilnvspgnlslap--qmeieGfVilptsarepV
                         bb                 bbbb    bbbbbbbbb      bbb

                             160       170       180       190       200 
d1ewfa1  ( 104 )    FdLsIegMsIsAdllgSnptsgkptitCssÇsShInsVhVhIsk----sk
d1ewfa2  ( 356 )    FlIgMhTtGsmeVsaes----nrlvg-----eLkldrllLelkhsnIg--
d4m4da2  ( 379 )    FrLgVvtnvfasltFnn----skvtg-----mlhpdkAqVrlieSkVg--
                    bbbbbb  bbbbbb        bbb      bbb    bbb         

                             210       220       230       240       250 
d1ewfa1  ( 151 )    VgwLiqLFhkkIesaLrnkMnsqVçekVtnsvsselqpyfqtlpvmtkid
d1ewfa2  ( 395 )    ------pFp---velLqdIMnyIvpilvlprvneklqkG-fplptp----
d4m4da2  ( 418 )    ------mFn---vnlfqaflnyyllnslYpdvnaelaqg-fpLplp----
                                    aaaaaaaaaa  aaaaaa aaa            

                             260       270     
d1ewfa1  ( 201 )    svaginyglvap----patta      
d1ewfa2  ( 431 )    arvqlynvvlqphqnFLLfGadvvyk 
d4m4da2  ( 454 )    rhiqLhdLdFqirkdFlyLGAnvqymr
                       bbb

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1ewfa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1ewfa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Bactericidal permeability-increasing protein, BPI	Bactericidal permeability-increasing protein, BPI	Human (Homo sapiens) [TaxId: 9606]	view
d1ewfa2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1ewfa2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Bactericidal permeability-increasing protein, BPI	Bactericidal permeability-increasing protein, BPI	Human (Homo sapiens) [TaxId: 9606]	view
d4m4da2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4m4da2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Mouse (Mus musculus) [TaxId: 10090]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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E	T	L	D	V	Q	M	K	G	E	F	Y	S	E	-	-	-	P	P	P	F	A	-	P	P	V	M	E	F	P	A	A	H	D	R	M	V	Y	L	G	L	S	D	Y	F	F	N	T	A	G	L	V	Y	Q	E	A	-	-	-	-	-	-	-	G	V	L	K	M	T	L	R	D	D	M	I	P	K	E	S	K	F	R	L	T	T	K	F	F	G	T	F	L	P	E	V	A	K	K	-	-	F	P	N	M	K	I	Q	I	-	H	V	S	A	S	T	P	P	H	L	S	V	Q	P	T	G	L	T	F	Y	P	-	-	A	V	D	V	Q	A	F	A	V	L	P	N	S	A	L	A	S	L	F	L	I	G	M	H	T	T	G	S	M	E	V	S	A	E	S	-	-	-	-	N	R	L	V	G	-	-	-	-	-	E	L	K	L	D	R	L	L	L	E	L	K	H	S	N	I	G	-	-	-	-	-	-	-	-	P	F	P	-	-	-	V	E	L	L	Q	D	I	M	N	Y	I	V	P	I	L	V	L	P	R	V	N	E	K	L	Q	K	G	-	F	P	L	P	T	P	-	-	-	-	A	R	V	Q	L	Y	N	V	V	L	Q	P	H	Q	N	F	L	L	F	G	A	D	V	V	Y	K	-
Q	V	L	D	V	M	F	K	G	E	I	F	N	R	N	H	R	S	P	V	A	T	P	T	P	T	M	S	L	P	E	D	S	K	Q	M	V	Y	F	A	I	S	D	Y	A	F	N	I	A	S	Y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	L	N	F	S	I	T	D	D	M	L	P	H	D	S	G	I	R	L	N	T	K	A	F	R	P	F	T	P	Q	I	Y	K	K	-	-	Y	P	D	M	K	L	E	L	-	L	G	T	V	V	S	A	P	I	L	N	V	S	P	G	N	L	S	L	A	P	-	-	Q	M	E	I	E	G	F	V	I	L	P	T	S	A	R	E	P	V	F	R	L	G	V	V	T	N	V	F	A	S	L	T	F	N	N	-	-	-	-	S	K	V	T	G	-	-	-	-	-	M	L	H	P	D	K	A	Q	V	R	L	I	E	S	K	V	G	-	-	-	-	-	-	-	-	M	F	N	-	-	-	V	N	L	F	Q	A	F	L	N	Y	Y	L	L	N	S	L	Y	P	D	V	N	A	E	L	A	Q	G	-	F	P	L	P	L	P	-	-	-	-	R	H	I	Q	L	H	D	L	D	F	Q	I	R	K	D	F	L	Y	L	G	A	N	V	Q	Y	M	R

Member	Chain	UniProtKB	GO term
d1ewfa1	A	P17213	GO:0001530
d1ewfa1	A	P17213	GO:0005576
d1ewfa1	A	P17213	GO:0005615
d1ewfa1	A	P17213	GO:0008289
d1ewfa1	A	P17213	GO:0016020
d1ewfa1	A	P17213	GO:0031663
d1ewfa1	A	P17213	GO:0032715
d1ewfa1	A	P17213	GO:0032717
d1ewfa1	A	P17213	GO:0032720
d1ewfa1	A	P17213	GO:0035578
d1ewfa1	A	P17213	GO:0035580
d1ewfa1	A	P17213	GO:0042742
d1ewfa1	A	P17213	GO:0043031
d1ewfa1	A	P17213	GO:0045087
d1ewfa1	A	P17213	GO:0050829
d1ewfa1	A	P17213	GO:0070062
d1ewfa1	A	P17213	GO:0001530
d1ewfa1	A	P17213	GO:0005576
d1ewfa1	A	P17213	GO:0005615
d1ewfa1	A	P17213	GO:0008289
d1ewfa1	A	P17213	GO:0016020
d1ewfa1	A	P17213	GO:0031663
d1ewfa1	A	P17213	GO:0032715
d1ewfa1	A	P17213	GO:0032717
d1ewfa1	A	P17213	GO:0032720
d1ewfa1	A	P17213	GO:0035578
d1ewfa1	A	P17213	GO:0035580
d1ewfa1	A	P17213	GO:0042742
d1ewfa1	A	P17213	GO:0043031
d1ewfa1	A	P17213	GO:0045087
d1ewfa1	A	P17213	GO:0050829
d1ewfa1	A	P17213	GO:0070062
d1ewfa2	A	P17213	GO:0001530
d1ewfa2	A	P17213	GO:0005576
d1ewfa2	A	P17213	GO:0005615
d1ewfa2	A	P17213	GO:0008289
d1ewfa2	A	P17213	GO:0016020
d1ewfa2	A	P17213	GO:0031663
d1ewfa2	A	P17213	GO:0032715
d1ewfa2	A	P17213	GO:0032717
d1ewfa2	A	P17213	GO:0032720
d1ewfa2	A	P17213	GO:0035578
d1ewfa2	A	P17213	GO:0035580
d1ewfa2	A	P17213	GO:0042742
d1ewfa2	A	P17213	GO:0043031
d1ewfa2	A	P17213	GO:0045087
d1ewfa2	A	P17213	GO:0050829
d1ewfa2	A	P17213	GO:0070062
d1ewfa2	A	P17213	GO:0001530
d1ewfa2	A	P17213	GO:0005576
d1ewfa2	A	P17213	GO:0005615
d1ewfa2	A	P17213	GO:0008289
d1ewfa2	A	P17213	GO:0016020
d1ewfa2	A	P17213	GO:0031663
d1ewfa2	A	P17213	GO:0032715
d1ewfa2	A	P17213	GO:0032717
d1ewfa2	A	P17213	GO:0032720
d1ewfa2	A	P17213	GO:0035578
d1ewfa2	A	P17213	GO:0035580
d1ewfa2	A	P17213	GO:0042742
d1ewfa2	A	P17213	GO:0043031
d1ewfa2	A	P17213	GO:0045087
d1ewfa2	A	P17213	GO:0050829
d1ewfa2	A	P17213	GO:0070062

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E	T	L	D	V	Q	M	K	G	E	F	Y	S	E	-	-	-	P	P	P	F	A	-	P	P	V	M	E	F	P	A	A	H	D	R	M	V	Y	L	G	L	S	D	Y	F	F	N	T	A	G	L	V	Y	Q	E	A	-	-	-	-	-	-	-	G	V	L	K	M	T	L	R	D	D	M	I	P	K	E	S	K	F	R	L	T	T	K	F	F	G	T	F	L	P	E	V	A	K	K	-	-	F	P	N	M	K	I	Q	I	-	H	V	S	A	S	T	P	P	H	L	S	V	Q	P	T	G	L	T	F	Y	P	-	-	A	V	D	V	Q	A	F	A	V	L	P	N	S	A	L	A	S	L	F	L	I	G	M	H	T	T	G	S	M	E	V	S	A	E	S	-	-	-	-	N	R	L	V	G	-	-	-	-	-	E	L	K	L	D	R	L	L	L	E	L	K	H	S	N	I	G	-	-	-	-	-	-	-	-	P	F	P	-	-	-	V	E	L	L	Q	D	I	M	N	Y	I	V	P	I	L	V	L	P	R	V	N	E	K	L	Q	K	G	-	F	P	L	P	T	P	-	-	-	-	A	R	V	Q	L	Y	N	V	V	L	Q	P	H	Q	N	F	L	L	F	G	A	D	V	V	Y	K	-
Q	V	L	D	V	M	F	K	G	E	I	F	N	R	N	H	R	S	P	V	A	T	P	T	P	T	M	S	L	P	E	D	S	K	Q	M	V	Y	F	A	I	S	D	Y	A	F	N	I	A	S	Y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	L	N	F	S	I	T	D	D	M	L	P	H	D	S	G	I	R	L	N	T	K	A	F	R	P	F	T	P	Q	I	Y	K	K	-	-	Y	P	D	M	K	L	E	L	-	L	G	T	V	V	S	A	P	I	L	N	V	S	P	G	N	L	S	L	A	P	-	-	Q	M	E	I	E	G	F	V	I	L	P	T	S	A	R	E	P	V	F	R	L	G	V	V	T	N	V	F	A	S	L	T	F	N	N	-	-	-	-	S	K	V	T	G	-	-	-	-	-	M	L	H	P	D	K	A	Q	V	R	L	I	E	S	K	V	G	-	-	-	-	-	-	-	-	M	F	N	-	-	-	V	N	L	F	Q	A	F	L	N	Y	Y	L	L	N	S	L	Y	P	D	V	N	A	E	L	A	Q	G	-	F	P	L	P	L	P	-	-	-	-	R	H	I	Q	L	H	D	L	D	F	Q	I	R	K	D	F	L	Y	L	G	A	N	V	Q	Y	M	R

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-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	N	P	G	V	V	V	R	I	S	Q	K	G	L	D	Y	A	S	Q	Q	G	T	A	A	L	Q	K	E	L	K	R	I	I	P	D	Y	S	D	S	F	K	I	L	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	G	K	G	H	Y	S	F	Y	S	M	D	I	R	E	F	Q	L	P	S	S	Q	I	S	M	V	P	N	V	G	L	K	F	S	I	S	N	A	N	I	I	S	G	K	W	K	A	Q	R	F	L	M	S	G	N	F	D	L	S	I	E	G	M	S	I	S	A	D	L	L	G	S	N	P	T	S	G	K	P	T	I	T	C	S	S	C	S	S	H	I	N	S	V	H	V	H	I	S	K	-	-	-	-	S	K	V	G	W	L	I	Q	L	F	H	K	K	I	E	S	A	L	R	N	K	M	N	S	Q	V	C	E	K	V	T	N	S	V	S	S	E	L	Q	P	Y	F	Q	T	L	P	V	M	T	K	I	D	S	V	A	G	I	N	Y	G	L	V	A	P	-	-	-	-	P	A	T	T	A	-	-	-	-	-	-
E	T	L	D	V	Q	M	K	G	E	F	Y	S	E	-	-	-	P	P	P	F	A	-	P	P	V	M	E	F	P	A	A	H	D	R	M	V	Y	L	G	L	S	D	Y	F	F	N	T	A	G	L	V	Y	Q	E	A	-	-	-	-	-	-	-	G	V	L	K	M	T	L	R	D	D	M	I	P	K	E	S	K	F	R	L	T	T	K	F	F	G	T	F	L	P	E	V	A	K	K	-	-	F	P	N	M	K	I	Q	I	-	H	V	S	A	S	T	P	P	H	L	S	V	Q	P	T	G	L	T	F	Y	P	-	-	A	V	D	V	Q	A	F	A	V	L	P	N	S	A	L	A	S	L	F	L	I	G	M	H	T	T	G	S	M	E	V	S	A	E	S	-	-	-	-	N	R	L	V	G	-	-	-	-	-	E	L	K	L	D	R	L	L	L	E	L	K	H	S	N	I	G	-	-	-	-	-	-	-	-	P	F	P	-	-	-	V	E	L	L	Q	D	I	M	N	Y	I	V	P	I	L	V	L	P	R	V	N	E	K	L	Q	K	G	-	F	P	L	P	T	P	-	-	-	-	A	R	V	Q	L	Y	N	V	V	L	Q	P	H	Q	N	F	L	L	F	G	A	D	V	V	Y	K	-
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									10										20										30										40										50										60										70										80										90										100										110										120										130										140										150										160										170										180										190										200										210										220										230										240										250										260										270
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