PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1ew4a-  (   1 )                     mndseFhrlAdqLWltIeerLddw-dgdsd---
d3iam7-  (   3 )                        assereLyeaWveLLswMreYAqakgvr--
d3oeqa-  (  52 )    vesstdgvpqevlnlpleka---heeAddyLdhlldsLeelseahpcip-
d3t3la-  (  90 )                     ldettYerlAeeTLdsLAefFedLadkpyTfed
                                          aaaaaaaaaaaaaaaaa           

                             60        70        80        90        100 
d1ew4a-  (  30 )    Idcein----------------ggvLtIt-Feng-skIiInrqe---plh
d3iam7-  (  31 )    fekeadFpdfiyrmerpydlpttimtASLSDglgepFLlAdVsprhaklk
d3oeqa-  ( 101 )    -dVels----------------hGvMtLe-Ipaf-gtYvInkqp---pn-
d3t3la-  ( 123 )    YdVsfg----------------sGvLtVkLGgdl-gtYvInkqt---pnk
                     bbbbb                  bbbbb       bbbbbb        

                             110       120       130       140       150 
d1ew4a-  (  59 )    qVwLaTkq--ggyhFdlk-gdewiCdrsgetFwdlLeqaatqqAgetVsf
d3iam7-  (  81 )    rIgLrlprahihlhAhyepgkglvtg-kipLtkerFfalAdrArealafa
d3oeqa-  ( 129 )    qIwLaSpls-gpnrFdll-ngeWvSlrngtkLtdiLteeVekAisk    
d3t3la-  ( 153 )    AIwLsSpss-gpkrYdwt-gknWvyshdgvSLHelLaaeLtkaLktkldL
                     bbbb      bbbbbb     bbb      aaaaaaaaaaaaa      

                             160 
d1ew4a-  ( 106 )    r         
d3iam7-                       
d3oeqa-                       
d3t3la-  ( 201 )    sslaySgkda

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1ew4a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1ew4a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	CyaY	Frataxin-like	Escherichia coli [TaxId: 562]	view
d3iam7- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3iam7- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	NADH-quinone oxidoreductase subunit 15, Nqo15	Nqo15-like	Thermus thermophilus [TaxId: 274]	view
d3oeqa- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3oeqa- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	C-terminal domain of frataxin	Frataxin-like	Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]	view
d3t3la- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3t3la- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	Frataxin-like	Human (Homo sapiens) [TaxId: 9606]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1ew4a_	A	P27838	GO:0005506
d1ew4a_	A	P27838	GO:0005515
d1ew4a_	A	P27838	GO:0005737
d1ew4a_	A	P27838	GO:0005829
d1ew4a_	A	P27838	GO:0008198
d1ew4a_	A	P27838	GO:0008199
d1ew4a_	A	P27838	GO:0016226
d1ew4a_	A	P27838	GO:0046872

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