PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1u9da1  (   2 )      phLrFraVeahiVesLvptLlneLsslLstarnaFtfelintqyfaeg
d3t5sa1  (   1 )    mpcAiVtTnaftdqadaFcldMg-vLatg---pvsyCmAgVrkadmsfgt
                       bbbb      aaaaaaaaa           333 bbbb         

                             60        70        80        90        100 
d1u9da1  (  50 )    g-vypVeVlWfgreqqtqdqIaqvItdqIrqllgadshLaVvfiplqrta
d3t5sa1  (  53 )    stdlCCfVdfyg-----np--saaItgcLthFVkpe-rVyIsfn      
                          bbbb            aaaaaaa            bb       

                            
d1u9da1  ( 100 )    yyldgqhf
d3t5sa1

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1u9da1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1u9da1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein VC0714	VC0714-like	Vibrio cholerae [TaxId: 666]		view
d3t5sa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3t5sa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Giardia lamblia [TaxId: 184922]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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-	-	P	H	L	R	F	R	A	V	E	A	H	I	V	E	S	L	V	P	T	L	L	N	E	L	S	S	L	L	S	T	A	R	N	A	F	T	F	E	L	I	N	T	Q	Y	F	A	E	G	G	-	V	Y	P	V	E	V	L	W	F	G	R	E	Q	Q	T	Q	D	Q	I	A	Q	V	I	T	D	Q	I	R	Q	L	L	G	A	D	S	H	L	A	V	V	F	I	P	L	Q	R	T	A	Y	Y	L	D	G	Q	H	F
M	P	C	A	I	V	T	T	N	A	F	T	D	Q	A	D	A	F	C	L	D	M	G	-	V	L	A	T	G	-	-	-	P	V	S	Y	C	M	A	G	V	R	K	A	D	M	S	F	G	T	S	T	D	L	C	C	F	V	D	F	Y	G	-	-	-	-	-	N	P	-	-	S	A	A	I	T	G	C	L	T	H	F	V	K	P	E	-	R	V	Y	I	S	F	N	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Member	Chain	UniProtKB	GO term

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M	P	C	A	I	V	T	T	N	A	F	T	D	Q	A	D	A	F	C	L	D	M	G	-	V	L	A	T	G	-	-	-	P	V	S	Y	C	M	A	G	V	R	K	A	D	M	S	F	G	T	S	T	D	L	C	C	F	V	D	F	Y	G	-	-	-	-	-	N	P	-	-	S	A	A	I	T	G	C	L	T	H	F	V	K	P	E	-	R	V	Y	I	S	F	N	-	-	-	-	-	-	-	-	-	-	-	-	-	-

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-	-	P	H	L	R	F	R	A	V	E	A	H	I	V	E	S	L	V	P	T	L	L	N	E	L	S	S	L	L	S	T	A	R	N	A	F	T	F	E	L	I	N	T	Q	Y	F	A	E	G	G	-	V	Y	P	V	E	V	L	W	F	G	R	E	Q	Q	T	Q	D	Q	I	A	Q	V	I	T	D	Q	I	R	Q	L	L	G	A	D	S	H	L	A	V	V	F	I	P	L	Q	R	T	A	Y	Y	L	D	G	Q	H	F
M	P	C	A	I	V	T	T	N	A	F	T	D	Q	A	D	A	F	C	L	D	M	G	-	V	L	A	T	G	-	-	-	P	V	S	Y	C	M	A	G	V	R	K	A	D	M	S	F	G	T	S	T	D	L	C	C	F	V	D	F	Y	G	-	-	-	-	-	N	P	-	-	S	A	A	I	T	G	C	L	T	H	F	V	K	P	E	-	R	V	Y	I	S	F	N	-	-	-	-	-	-	-	-	-	-	-	-	-	-

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M	P	C	A	I	V	T	T	N	A	F	T	D	Q	A	D	A	F	C	L	D	M	G	-	V	L	A	T	G	-	-	-	P	V	S	Y	C	M	A	G	V	R	K	A	D	M	S	F	G	T	S	T	D	L	C	C	F	V	D	F	Y	G	-	-	-	-	-	N	P	-	-	S	A	A	I	T	G	C	L	T	H	F	V	K	P	E	-	R	V	Y	I	S	F	N	-	-	-	-	-	-	-	-	-	-	-	-	-	-