PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1syxb-  (  25 )             dvmWeykwentgdaelygpftSaqMqtwvsegyFpdGVyCr
d1wh2a1  (   8 )    vrvlsydkeklnWlykdp---qglvqgpfSltqlkawsdaeyFtkqfrvW
                                bbbb         bbbb aaaaaaaaa        bbb

                             60        70  
d1syxb-  (  66 )    kldppgGqfynSkridFdlyt
d1wh2a1  (  55 )    mtgesmesavlltdv-lrl  
                    b        bb

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1syxb- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1syxb- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	GYF domain from cd2bp2 protein	GYF domain	Human (Homo sapiens) [TaxId: 9606]		view
d1wh2a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1wh2a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical rotein At5g08430	GYF domain	Thale cress (Arabidopsis thaliana) [TaxId: 3702]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60										70
-	-	-	-	-	-	-	-	-	D	V	M	W	E	Y	K	W	E	N	T	G	D	A	E	L	Y	G	P	F	T	S	A	Q	M	Q	T	W	V	S	E	G	Y	F	P	D	G	V	Y	C	R	K	L	D	P	P	G	G	Q	F	Y	N	S	K	R	I	D	F	D	L	Y	T
V	R	V	L	S	Y	D	K	E	K	L	N	W	L	Y	K	D	P	-	-	-	Q	G	L	V	Q	G	P	F	S	L	T	Q	L	K	A	W	S	D	A	E	Y	F	T	K	Q	F	R	V	W	M	T	G	E	S	M	E	S	A	V	L	L	T	D	V	-	L	R	L	-	-

Member	Chain	UniProtKB	GO term

									10										20										30										40										50										60										70
-	-	-	-	-	-	-	-	-	D	V	M	W	E	Y	K	W	E	N	T	G	D	A	E	L	Y	G	P	F	T	S	A	Q	M	Q	T	W	V	S	E	G	Y	F	P	D	G	V	Y	C	R	K	L	D	P	P	G	G	Q	F	Y	N	S	K	R	I	D	F	D	L	Y	T
V	R	V	L	S	Y	D	K	E	K	L	N	W	L	Y	K	D	P	-	-	-	Q	G	L	V	Q	G	P	F	S	L	T	Q	L	K	A	W	S	D	A	E	Y	F	T	K	Q	F	R	V	W	M	T	G	E	S	M	E	S	A	V	L	L	T	D	V	-	L	R	L	-	-

									10										20										30										40										50										60										70
-	-	-	-	-	-	-	-	-	D	V	M	W	E	Y	K	W	E	N	T	G	D	A	E	L	Y	G	P	F	T	S	A	Q	M	Q	T	W	V	S	E	G	Y	F	P	D	G	V	Y	C	R	K	L	D	P	P	G	G	Q	F	Y	N	S	K	R	I	D	F	D	L	Y	T
V	R	V	L	S	Y	D	K	E	K	L	N	W	L	Y	K	D	P	-	-	-	Q	G	L	V	Q	G	P	F	S	L	T	Q	L	K	A	W	S	D	A	E	Y	F	T	K	Q	F	R	V	W	M	T	G	E	S	M	E	S	A	V	L	L	T	D	V	-	L	R	L	-	-

									10										20										30										40										50										60										70
-	-	-	-	-	-	-	-	-	D	V	M	W	E	Y	K	W	E	N	T	G	D	A	E	L	Y	G	P	F	T	S	A	Q	M	Q	T	W	V	S	E	G	Y	F	P	D	G	V	Y	C	R	K	L	D	P	P	G	G	Q	F	Y	N	S	K	R	I	D	F	D	L	Y	T
V	R	V	L	S	Y	D	K	E	K	L	N	W	L	Y	K	D	P	-	-	-	Q	G	L	V	Q	G	P	F	S	L	T	Q	L	K	A	W	S	D	A	E	Y	F	T	K	Q	F	R	V	W	M	T	G	E	S	M	E	S	A	V	L	L	T	D	V	-	L	R	L	-	-