PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1ewqa4  (   2 )    egLkgegpg---plpplLqqYVelrdqypdyLLLFQvgdfYeCFGedAer
d1wb9a4  (   2 )         saienfdahtpmMqqYlrlkaqhpeiLLFYrmgdfYTLFyddAkr
                                   aaaaaaaaaaaa    bbbbbb  bbb  aaaaaa

                             60        70        80        90        100 
d1ewqa4  (  50 )    LaraLglvlthktsk-dftTp-AgIplrafeayAerLlk-gfrLAVAdqv
d1wb9a4  (  47 )    AsqlLdisltkrgasagepipmAgIpyhavenylakLvnqgesVAICeqi
                    aaaaa      b       b   bbb333aaaaaaaaa     bbbbbb 

                             110       120 
d1ewqa4  (  99 )    epaeeAeglvrReVtqlltpgt
d1wb9a4  (  97 )    gdpatskgpVerkVvrivtp  
                      333      bbbbbbb

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1ewqa4 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1ewqa4 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	DNA repair protein MutS, domain I	DNA repair protein MutS, domain I	Thermus aquaticus [TaxId: 271]		view
d1wb9a4 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1wb9a4 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	DNA repair protein MutS, domain I	DNA repair protein MutS, domain I	Escherichia coli [TaxId: 562]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1ewqa4	A	Q56215	GO:0003677
d1ewqa4	A	Q56215	GO:0003684
d1ewqa4	A	Q56215	GO:0003690
d1ewqa4	A	Q56215	GO:0005524
d1ewqa4	A	Q56215	GO:0006281
d1ewqa4	A	Q56215	GO:0006298
d1ewqa4	A	Q56215	GO:0030983
d1ewqa4	A	Q56215	GO:0140664
d1ewqa4	A	Q56215	GO:0003677
d1ewqa4	A	Q56215	GO:0003684
d1ewqa4	A	Q56215	GO:0003690
d1ewqa4	A	Q56215	GO:0005524
d1ewqa4	A	Q56215	GO:0006281
d1ewqa4	A	Q56215	GO:0006298
d1ewqa4	A	Q56215	GO:0030983
d1ewqa4	A	Q56215	GO:0140664
d1ewqa4	A	Q56215	GO:0003677
d1ewqa4	A	Q56215	GO:0003684
d1ewqa4	A	Q56215	GO:0003690
d1ewqa4	A	Q56215	GO:0005524
d1ewqa4	A	Q56215	GO:0006281
d1ewqa4	A	Q56215	GO:0006298
d1ewqa4	A	Q56215	GO:0030983
d1ewqa4	A	Q56215	GO:0140664
d1wb9a4	A	P23909	GO:0000018
d1wb9a4	A	P23909	GO:0003677
d1wb9a4	A	P23909	GO:0003684
d1wb9a4	A	P23909	GO:0005515
d1wb9a4	A	P23909	GO:0005524
d1wb9a4	A	P23909	GO:0005829
d1wb9a4	A	P23909	GO:0006281
d1wb9a4	A	P23909	GO:0006298
d1wb9a4	A	P23909	GO:0006974
d1wb9a4	A	P23909	GO:0008301
d1wb9a4	A	P23909	GO:0016887
d1wb9a4	A	P23909	GO:0030983
d1wb9a4	A	P23909	GO:0032136
d1wb9a4	A	P23909	GO:0032300
d1wb9a4	A	P23909	GO:0042802
d1wb9a4	A	P23909	GO:0043531
d1wb9a4	A	P23909	GO:0140664
d1wb9a4	A	P23909	GO:1990710
d1wb9a4	A	P23909	GO:0000018
d1wb9a4	A	P23909	GO:0003677
d1wb9a4	A	P23909	GO:0003684
d1wb9a4	A	P23909	GO:0005515
d1wb9a4	A	P23909	GO:0005524
d1wb9a4	A	P23909	GO:0005829
d1wb9a4	A	P23909	GO:0006281
d1wb9a4	A	P23909	GO:0006298
d1wb9a4	A	P23909	GO:0006974
d1wb9a4	A	P23909	GO:0008301
d1wb9a4	A	P23909	GO:0016887
d1wb9a4	A	P23909	GO:0030983
d1wb9a4	A	P23909	GO:0032136
d1wb9a4	A	P23909	GO:0032300
d1wb9a4	A	P23909	GO:0042802
d1wb9a4	A	P23909	GO:0043531
d1wb9a4	A	P23909	GO:0140664
d1wb9a4	A	P23909	GO:1990710
d1wb9a4	A	P23909	GO:0000018
d1wb9a4	A	P23909	GO:0003677
d1wb9a4	A	P23909	GO:0003684
d1wb9a4	A	P23909	GO:0005515
d1wb9a4	A	P23909	GO:0005524
d1wb9a4	A	P23909	GO:0005829
d1wb9a4	A	P23909	GO:0006281
d1wb9a4	A	P23909	GO:0006298
d1wb9a4	A	P23909	GO:0006974
d1wb9a4	A	P23909	GO:0008301
d1wb9a4	A	P23909	GO:0016887
d1wb9a4	A	P23909	GO:0030983
d1wb9a4	A	P23909	GO:0032136
d1wb9a4	A	P23909	GO:0032300
d1wb9a4	A	P23909	GO:0042802
d1wb9a4	A	P23909	GO:0043531
d1wb9a4	A	P23909	GO:0140664
d1wb9a4	A	P23909	GO:1990710

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