PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2p5ma-  (  68 )    qrfnplskLkraLmdAfvkIdsashmIvLkTmpgnAqaIGalMdnLdwde
d3buea-  (  93 )        gtdrMarLLgelLvsTddsgnlAvLrTppgaAhyLAsAIdrAalpq
                         aaaaaaaaaaa  bbbbb  bbbbb     aaaaaaaaa      

                             60        70        80  
d2p5ma-  ( 118 )    MmgTiCgddtIlIiCrtpedTegVknrLleLl
d3buea-  ( 139 )    VvgTiAgddtIlVvArepttGaqLagmFenlr
                      bbbb   bbbbb      aaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d2p5ma- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2p5ma- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	C-terminal domain of arginine repressor	C-terminal domain of arginine repressor	Bacillus subtilis [TaxId: 1423]		view
d3buea- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3buea- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Mycobacterium tuberculosis [TaxId: 83332]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60										70										80
Q	R	F	N	P	L	S	K	L	K	R	A	L	M	D	A	F	V	K	I	D	S	A	S	H	M	I	V	L	K	T	M	P	G	N	A	Q	A	I	G	A	L	M	D	N	L	D	W	D	E	M	M	G	T	I	C	G	D	D	T	I	L	I	I	C	R	T	P	E	D	T	E	G	V	K	N	R	L	L	E	L	L
-	-	-	-	G	T	D	R	M	A	R	L	L	G	E	L	L	V	S	T	D	D	S	G	N	L	A	V	L	R	T	P	P	G	A	A	H	Y	L	A	S	A	I	D	R	A	A	L	P	Q	V	V	G	T	I	A	G	D	D	T	I	L	V	V	A	R	E	P	T	T	G	A	Q	L	A	G	M	F	E	N	L	R

Member	Chain	UniProtKB	GO term

									10										20										30										40										50										60										70										80
Q	R	F	N	P	L	S	K	L	K	R	A	L	M	D	A	F	V	K	I	D	S	A	S	H	M	I	V	L	K	T	M	P	G	N	A	Q	A	I	G	A	L	M	D	N	L	D	W	D	E	M	M	G	T	I	C	G	D	D	T	I	L	I	I	C	R	T	P	E	D	T	E	G	V	K	N	R	L	L	E	L	L
-	-	-	-	G	T	D	R	M	A	R	L	L	G	E	L	L	V	S	T	D	D	S	G	N	L	A	V	L	R	T	P	P	G	A	A	H	Y	L	A	S	A	I	D	R	A	A	L	P	Q	V	V	G	T	I	A	G	D	D	T	I	L	V	V	A	R	E	P	T	T	G	A	Q	L	A	G	M	F	E	N	L	R

									10										20										30										40										50										60										70										80
Q	R	F	N	P	L	S	K	L	K	R	A	L	M	D	A	F	V	K	I	D	S	A	S	H	M	I	V	L	K	T	M	P	G	N	A	Q	A	I	G	A	L	M	D	N	L	D	W	D	E	M	M	G	T	I	C	G	D	D	T	I	L	I	I	C	R	T	P	E	D	T	E	G	V	K	N	R	L	L	E	L	L
-	-	-	-	G	T	D	R	M	A	R	L	L	G	E	L	L	V	S	T	D	D	S	G	N	L	A	V	L	R	T	P	P	G	A	A	H	Y	L	A	S	A	I	D	R	A	A	L	P	Q	V	V	G	T	I	A	G	D	D	T	I	L	V	V	A	R	E	P	T	T	G	A	Q	L	A	G	M	F	E	N	L	R

									10										20										30										40										50										60										70										80
Q	R	F	N	P	L	S	K	L	K	R	A	L	M	D	A	F	V	K	I	D	S	A	S	H	M	I	V	L	K	T	M	P	G	N	A	Q	A	I	G	A	L	M	D	N	L	D	W	D	E	M	M	G	T	I	C	G	D	D	T	I	L	I	I	C	R	T	P	E	D	T	E	G	V	K	N	R	L	L	E	L	L
-	-	-	-	G	T	D	R	M	A	R	L	L	G	E	L	L	V	S	T	D	D	S	G	N	L	A	V	L	R	T	P	P	G	A	A	H	Y	L	A	S	A	I	D	R	A	A	L	P	Q	V	V	G	T	I	A	G	D	D	T	I	L	V	V	A	R	E	P	T	T	G	A	Q	L	A	G	M	F	E	N	L	R