PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1ru0a-  (   5 )    awLtaeer--lipgLaagWselserdAIykefsf-nfnqAfgFmsrValq
d1usma-  (   1 )                    mdwee---rkrlVKtFafpnfreAldFAnrVgaL
d2ebba-  (   4 )     rlteeevqallekad-gWklader-wIvkkYrfqdylqGieFvrrIaai
                                       bb      bbbbbb   aaaaaaaaaaaaaa

                             60        70        80        90       
d1ru0a-  (  57 )    AekmnhhPewfnvynkVqItLtShdcgGLTkrDV-LAqfIekAaas  
d1usma-  (  35 )    AerenhhPrltvewgrVtVeWwthsaggVtekDreMArlTdallqr  
d2ebba-  (  51 )    SenanhhPfisidyklItVkLSswrakGLtklDFdLAkqYdevynqmk
                    aaa     bbbbb  bbbbbb               aaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1ru0a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1ru0a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	DcoH-like protein DCoH2	PCD-like	Mouse (Mus musculus) [TaxId: 10090]	view
d1usma- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1usma- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH)	PCD-like	Thermus thermophilus [TaxId: 274]	view
d2ebba- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2ebba- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Geobacillus kaustophilus [TaxId: 1462]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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A	W	L	T	A	E	E	R	-	-	L	I	P	G	L	A	A	G	W	S	E	L	S	E	R	D	A	I	Y	K	E	F	S	F	-	N	F	N	Q	A	F	G	F	M	S	R	V	A	L	Q	A	E	K	M	N	H	H	P	E	W	F	N	V	Y	N	K	V	Q	I	T	L	T	S	H	D	C	G	G	L	T	K	R	D	V	-	L	A	Q	F	I	E	K	A	A	A	S	-	-
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	M	D	W	E	E	-	-	-	R	K	R	L	V	K	T	F	A	F	P	N	F	R	E	A	L	D	F	A	N	R	V	G	A	L	A	E	R	E	N	H	H	P	R	L	T	V	E	W	G	R	V	T	V	E	W	W	T	H	S	A	G	G	V	T	E	K	D	R	E	M	A	R	L	T	D	A	L	L	Q	R	-	-
-	R	L	T	E	E	E	V	Q	A	L	L	E	K	A	D	-	G	W	K	L	A	D	E	R	-	W	I	V	K	K	Y	R	F	Q	D	Y	L	Q	G	I	E	F	V	R	R	I	A	A	I	S	E	N	A	N	H	H	P	F	I	S	I	D	Y	K	L	I	T	V	K	L	S	S	W	R	A	K	G	L	T	K	L	D	F	D	L	A	K	Q	Y	D	E	V	Y	N	Q	M	K

Member	Chain	UniProtKB	GO term
d1ru0a_	A	Q9CZL5	GO:0006729
d1ru0a_	A	Q9CZL5	GO:0008124
d1usma_	A	P83819	GO:0006729
d1usma_	A	P83819	GO:0008124
d1usma_	A	P83819	GO:0016829

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A	W	L	T	A	E	E	R	-	-	L	I	P	G	L	A	A	G	W	S	E	L	S	E	R	D	A	I	Y	K	E	F	S	F	-	N	F	N	Q	A	F	G	F	M	S	R	V	A	L	Q	A	E	K	M	N	H	H	P	E	W	F	N	V	Y	N	K	V	Q	I	T	L	T	S	H	D	C	G	G	L	T	K	R	D	V	-	L	A	Q	F	I	E	K	A	A	A	S	-	-
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	M	D	W	E	E	-	-	-	R	K	R	L	V	K	T	F	A	F	P	N	F	R	E	A	L	D	F	A	N	R	V	G	A	L	A	E	R	E	N	H	H	P	R	L	T	V	E	W	G	R	V	T	V	E	W	W	T	H	S	A	G	G	V	T	E	K	D	R	E	M	A	R	L	T	D	A	L	L	Q	R	-	-
-	R	L	T	E	E	E	V	Q	A	L	L	E	K	A	D	-	G	W	K	L	A	D	E	R	-	W	I	V	K	K	Y	R	F	Q	D	Y	L	Q	G	I	E	F	V	R	R	I	A	A	I	S	E	N	A	N	H	H	P	F	I	S	I	D	Y	K	L	I	T	V	K	L	S	S	W	R	A	K	G	L	T	K	L	D	F	D	L	A	K	Q	Y	D	E	V	Y	N	Q	M	K

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A	W	L	T	A	E	E	R	-	-	L	I	P	G	L	A	A	G	W	S	E	L	S	E	R	D	A	I	Y	K	E	F	S	F	-	N	F	N	Q	A	F	G	F	M	S	R	V	A	L	Q	A	E	K	M	N	H	H	P	E	W	F	N	V	Y	N	K	V	Q	I	T	L	T	S	H	D	C	G	G	L	T	K	R	D	V	-	L	A	Q	F	I	E	K	A	A	A	S	-	-
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	M	D	W	E	E	-	-	-	R	K	R	L	V	K	T	F	A	F	P	N	F	R	E	A	L	D	F	A	N	R	V	G	A	L	A	E	R	E	N	H	H	P	R	L	T	V	E	W	G	R	V	T	V	E	W	W	T	H	S	A	G	G	V	T	E	K	D	R	E	M	A	R	L	T	D	A	L	L	Q	R	-	-
-	R	L	T	E	E	E	V	Q	A	L	L	E	K	A	D	-	G	W	K	L	A	D	E	R	-	W	I	V	K	K	Y	R	F	Q	D	Y	L	Q	G	I	E	F	V	R	R	I	A	A	I	S	E	N	A	N	H	H	P	F	I	S	I	D	Y	K	L	I	T	V	K	L	S	S	W	R	A	K	G	L	T	K	L	D	F	D	L	A	K	Q	Y	D	E	V	Y	N	Q	M	K

									10										20										30										40										50										60										70										80										90
A	W	L	T	A	E	E	R	-	-	L	I	P	G	L	A	A	G	W	S	E	L	S	E	R	D	A	I	Y	K	E	F	S	F	-	N	F	N	Q	A	F	G	F	M	S	R	V	A	L	Q	A	E	K	M	N	H	H	P	E	W	F	N	V	Y	N	K	V	Q	I	T	L	T	S	H	D	C	G	G	L	T	K	R	D	V	-	L	A	Q	F	I	E	K	A	A	A	S	-	-
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	M	D	W	E	E	-	-	-	R	K	R	L	V	K	T	F	A	F	P	N	F	R	E	A	L	D	F	A	N	R	V	G	A	L	A	E	R	E	N	H	H	P	R	L	T	V	E	W	G	R	V	T	V	E	W	W	T	H	S	A	G	G	V	T	E	K	D	R	E	M	A	R	L	T	D	A	L	L	Q	R	-	-
-	R	L	T	E	E	E	V	Q	A	L	L	E	K	A	D	-	G	W	K	L	A	D	E	R	-	W	I	V	K	K	Y	R	F	Q	D	Y	L	Q	G	I	E	F	V	R	R	I	A	A	I	S	E	N	A	N	H	H	P	F	I	S	I	D	Y	K	L	I	T	V	K	L	S	S	W	R	A	K	G	L	T	K	L	D	F	D	L	A	K	Q	Y	D	E	V	Y	N	Q	M	K