PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1svdm1  (   3 )    emqdykq--slkyetfSylppmnaeriraqIkyAiaqgwsPgIeHVevkn
d1wdds-  (   2 )      qvwpiegikkfetlsylppltvedllkqIeyLlrskwvPCLefsk--v
d4f0hb-  ( 501 )            mrItqgtfSflpdltdeqIkkqIdyMiskkLaIgIeyTNdIh
                                           aaaaaaaaaaaaa   bbbbbbb    

                             60        70        80        90        100 
d1svdm1  (  51 )    smnq-------------yWymwklpffgeqnvdnVlaeIeaCrsaypthQ
d1wdds-  (  48 )    GfvyrenhrspgyydgryWtmwklpmfgctdatqVlkeLeeAkkaypdAF
d4f0hb-  ( 543 )    prns-------------fWemwglplfevtdpapVlfeInaCrkaksnfY
                                       bb          aaaaaaaaaaaaaa    b

                             110       120       130       140       150 
d1svdm1  (  88 )    VkLVAydn--yaqslglaFVvyrG                          
d1wdds-  (  98 )    VrIIGfdn--vrqvqlisFiAykppgc                       
d4f0hb-  ( 580 )    IkVVGfssergiestiisFIVnrPkhEpGfnlirqedksrsikysiqAye
                    bbbbbbb      bbbbbbbbb                            

                             
d1svdm1                      
d1wdds-                      
d4f0hb-  ( 630 )    Tykpedqry

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1svdm1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1svdm1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Ribulose 1,5-bisphosphate carboxylase-oxygenase	RuBisCO, small subunit	Halothiobacillus neapolitanus [TaxId: 927]	view
d1wdds- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1wdds- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Ribulose 1,5-bisphosphate carboxylase-oxygenase	RuBisCO, small subunit	Rice (Oryza sativa) [TaxId: 4530]	view
d4f0hb- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4f0hb- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	RuBisCO, small subunit	Red algae (Galdieria sulphuraria) [TaxId: 130081]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1svdm1	M	O85040	GO:0015977
d1svdm1	M	O85040	GO:0016984
d1svdm1	M	O85040	GO:0019253
d1svdm1	M	O85040	GO:0031470
d1svdm1	M	P45686	GO:0015977
d1svdm1	M	P45686	GO:0016984
d1svdm1	M	P45686	GO:0019253
d1svdm1	M	P45686	GO:0031470

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