PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1ev0a-  (  31 )    rsdaephylpqlrkdilevickyvqidpemvtvqleqkdgdisilelnvt
d6u6sa-  (  38 )          dylptlrkelmevlskyvnvsldnirisqekqdg-mdvlelnit
                            aaaaaaaaaaaaaaa    333bbbbbbb     bbbbbbb 

                            
d1ev0a-  (  81 )    lpeaeelk
d6u6sa-  (  81 )    l

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1ev0a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1ev0a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Cell division protein MinE topological specificity domain	Cell division protein MinE topological specificity domain	Escherichia coli [TaxId: 562]		view
d6u6sa- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d6u6sa- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Neisseria gonorrhoeae [TaxId: 485]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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R	S	D	A	E	P	H	Y	L	P	Q	L	R	K	D	I	L	E	V	I	C	K	Y	V	Q	I	D	P	E	M	V	T	V	Q	L	E	Q	K	D	G	D	I	S	I	L	E	L	N	V	T	L	P	E	A	E	E	L	K
-	-	-	-	-	-	D	Y	L	P	T	L	R	K	E	L	M	E	V	L	S	K	Y	V	N	V	S	L	D	N	I	R	I	S	Q	E	K	Q	D	G	-	M	D	V	L	E	L	N	I	T	L	-	-	-	-	-	-	-

Member	Chain	UniProtKB	GO term
d1ev0a_	A	P0A734	GO:0032955
d1ev0a_	A	P0A734	GO:0051301

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R	S	D	A	E	P	H	Y	L	P	Q	L	R	K	D	I	L	E	V	I	C	K	Y	V	Q	I	D	P	E	M	V	T	V	Q	L	E	Q	K	D	G	D	I	S	I	L	E	L	N	V	T	L	P	E	A	E	E	L	K
-	-	-	-	-	-	D	Y	L	P	T	L	R	K	E	L	M	E	V	L	S	K	Y	V	N	V	S	L	D	N	I	R	I	S	Q	E	K	Q	D	G	-	M	D	V	L	E	L	N	I	T	L	-	-	-	-	-	-	-

									10										20										30										40										50
R	S	D	A	E	P	H	Y	L	P	Q	L	R	K	D	I	L	E	V	I	C	K	Y	V	Q	I	D	P	E	M	V	T	V	Q	L	E	Q	K	D	G	D	I	S	I	L	E	L	N	V	T	L	P	E	A	E	E	L	K
-	-	-	-	-	-	D	Y	L	P	T	L	R	K	E	L	M	E	V	L	S	K	Y	V	N	V	S	L	D	N	I	R	I	S	Q	E	K	Q	D	G	-	M	D	V	L	E	L	N	I	T	L	-	-	-	-	-	-	-

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R	S	D	A	E	P	H	Y	L	P	Q	L	R	K	D	I	L	E	V	I	C	K	Y	V	Q	I	D	P	E	M	V	T	V	Q	L	E	Q	K	D	G	D	I	S	I	L	E	L	N	V	T	L	P	E	A	E	E	L	K
-	-	-	-	-	-	D	Y	L	P	T	L	R	K	E	L	M	E	V	L	S	K	Y	V	N	V	S	L	D	N	I	R	I	S	Q	E	K	Q	D	G	-	M	D	V	L	E	L	N	I	T	L	-	-	-	-	-	-	-