PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1tiga-  (  83 )            invkeVrLsptIeehdFntklrnArkfLekgdkVkAtIrFkg
d2m71a1  (   4 )          kvidikeiklsvkiaqndinykvkhAlefleqgkhvrFrvflkg
d6vrja-  (  86 )    vakknqkqaqvkeikFrpgteegdyqvklrnlvrflsegdkAkvSlrfrg
                               bbbbb     aaaaaaaaaaaaaaa     bbbbb    

                             60        70        80        90      
d1tiga-  ( 125 )    raithkeiGqrvLdrLseaCadiAvvetaPkmdgrnMfLvLaPknd 
d2m71a1  (  48 )    rematpeaGvallekiwtmieneAnrdkepnfegryvnMlvtpkk-a
d6vrja-  ( 136 )    remahqelGmellkrveadlveyGtveqhpklegrqlmMviapkkkk
                          aaaaaaaaaaaaa     bb    bbb  bbbbbbb

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1tiga- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1tiga- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Translation initiation factor IF3, C-terminal domain	Translation initiation factor IF3, C-terminal domain	Bacillus stearothermophilus [TaxId: 1422]	view
d2m71a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2m71a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Campylobacter jejuni [TaxId: 197]	view
d6vrja- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d6vrja- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	Translation initiation factor IF3, C-terminal domain	Pseudomonas aeruginosa [TaxId: 287]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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-	-	-	-	-	-	-	-	I	N	V	K	E	V	R	L	S	P	T	I	E	E	H	D	F	N	T	K	L	R	N	A	R	K	F	L	E	K	G	D	K	V	K	A	T	I	R	F	K	G	R	A	I	T	H	K	E	I	G	Q	R	V	L	D	R	L	S	E	A	C	A	D	I	A	V	V	E	T	A	P	K	M	D	G	R	N	M	F	L	V	L	A	P	K	N	D	-
-	-	-	-	-	-	K	V	I	D	I	K	E	I	K	L	S	V	K	I	A	Q	N	D	I	N	Y	K	V	K	H	A	L	E	F	L	E	Q	G	K	H	V	R	F	R	V	F	L	K	G	R	E	M	A	T	P	E	A	G	V	A	L	L	E	K	I	W	T	M	I	E	N	E	A	N	R	D	K	E	P	N	F	E	G	R	Y	V	N	M	L	V	T	P	K	K	-	A
V	A	K	K	N	Q	K	Q	A	Q	V	K	E	I	K	F	R	P	G	T	E	E	G	D	Y	Q	V	K	L	R	N	L	V	R	F	L	S	E	G	D	K	A	K	V	S	L	R	F	R	G	R	E	M	A	H	Q	E	L	G	M	E	L	L	K	R	V	E	A	D	L	V	E	Y	G	T	V	E	Q	H	P	K	L	E	G	R	Q	L	M	M	V	I	A	P	K	K	K	K

Member	Chain	UniProtKB	GO term
d1tiga_	A	P03000	GO:0003743
d1tiga_	A	P03000	GO:0006413

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-	-	-	-	-	-	K	V	I	D	I	K	E	I	K	L	S	V	K	I	A	Q	N	D	I	N	Y	K	V	K	H	A	L	E	F	L	E	Q	G	K	H	V	R	F	R	V	F	L	K	G	R	E	M	A	T	P	E	A	G	V	A	L	L	E	K	I	W	T	M	I	E	N	E	A	N	R	D	K	E	P	N	F	E	G	R	Y	V	N	M	L	V	T	P	K	K	-	A
V	A	K	K	N	Q	K	Q	A	Q	V	K	E	I	K	F	R	P	G	T	E	E	G	D	Y	Q	V	K	L	R	N	L	V	R	F	L	S	E	G	D	K	A	K	V	S	L	R	F	R	G	R	E	M	A	H	Q	E	L	G	M	E	L	L	K	R	V	E	A	D	L	V	E	Y	G	T	V	E	Q	H	P	K	L	E	G	R	Q	L	M	M	V	I	A	P	K	K	K	K

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-	-	-	-	-	-	K	V	I	D	I	K	E	I	K	L	S	V	K	I	A	Q	N	D	I	N	Y	K	V	K	H	A	L	E	F	L	E	Q	G	K	H	V	R	F	R	V	F	L	K	G	R	E	M	A	T	P	E	A	G	V	A	L	L	E	K	I	W	T	M	I	E	N	E	A	N	R	D	K	E	P	N	F	E	G	R	Y	V	N	M	L	V	T	P	K	K	-	A
V	A	K	K	N	Q	K	Q	A	Q	V	K	E	I	K	F	R	P	G	T	E	E	G	D	Y	Q	V	K	L	R	N	L	V	R	F	L	S	E	G	D	K	A	K	V	S	L	R	F	R	G	R	E	M	A	H	Q	E	L	G	M	E	L	L	K	R	V	E	A	D	L	V	E	Y	G	T	V	E	Q	H	P	K	L	E	G	R	Q	L	M	M	V	I	A	P	K	K	K	K

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-	-	-	-	-	-	K	V	I	D	I	K	E	I	K	L	S	V	K	I	A	Q	N	D	I	N	Y	K	V	K	H	A	L	E	F	L	E	Q	G	K	H	V	R	F	R	V	F	L	K	G	R	E	M	A	T	P	E	A	G	V	A	L	L	E	K	I	W	T	M	I	E	N	E	A	N	R	D	K	E	P	N	F	E	G	R	Y	V	N	M	L	V	T	P	K	K	-	A
V	A	K	K	N	Q	K	Q	A	Q	V	K	E	I	K	F	R	P	G	T	E	E	G	D	Y	Q	V	K	L	R	N	L	V	R	F	L	S	E	G	D	K	A	K	V	S	L	R	F	R	G	R	E	M	A	H	Q	E	L	G	M	E	L	L	K	R	V	E	A	D	L	V	E	Y	G	T	V	E	Q	H	P	K	L	E	G	R	Q	L	M	M	V	I	A	P	K	K	K	K