PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1f7ua3  (   2 )    astanmisqLkklsiAepavAkdshPdvnivdLMrNYISqeLskiSgvds
d1iq0a3  (   1 )                                mlrraLEeaIaqALkem-gvpv
                                                  aaaaaaaaaaaaa       

                             60        70        80        90        100 
d1f7ua3  (  52 )    slIFpALewTntmerGdLlIpIprLrik-ganpkdlAvqwaekFpcgdFL
d1iq0a3  (  22 )    rl---kVarApkdkpGdygVpLfaLakelrkppqaiAqeLkdrLplpefV
                           bb        bbbb           aaaaaaaaaa       b

                             110       120       130   
d1f7ua3  ( 101 )    ekVeangpfIqFfFnpqFlaklvipdiltrkedyg
d1iq0a3  (  69 )    eeAvpvgGyLNFrLrteallrealrp----ka   
                    bbbbbb  bbbbbb aaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1f7ua3 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1f7ua3 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain	Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain	Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]		view
d1iq0a3 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1iq0a3 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain	Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain	Thermus thermophilus [TaxId: 274]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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A	S	T	A	N	M	I	S	Q	L	K	K	L	S	I	A	E	P	A	V	A	K	D	S	H	P	D	V	N	I	V	D	L	M	R	N	Y	I	S	Q	E	L	S	K	I	S	G	V	D	S	S	L	I	F	P	A	L	E	W	T	N	T	M	E	R	G	D	L	L	I	P	I	P	R	L	R	I	K	-	G	A	N	P	K	D	L	A	V	Q	W	A	E	K	F	P	C	G	D	F	L	E	K	V	E	A	N	G	P	F	I	Q	F	F	F	N	P	Q	F	L	A	K	L	V	I	P	D	I	L	T	R	K	E	D	Y	G
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Member	Chain	UniProtKB	GO term
d1f7ua3	A	Q05506	GO:0000166
d1f7ua3	A	Q05506	GO:0004812
d1f7ua3	A	Q05506	GO:0004814
d1f7ua3	A	Q05506	GO:0005524
d1f7ua3	A	Q05506	GO:0005737
d1f7ua3	A	Q05506	GO:0005739
d1f7ua3	A	Q05506	GO:0005829
d1f7ua3	A	Q05506	GO:0006412
d1f7ua3	A	Q05506	GO:0006418
d1f7ua3	A	Q05506	GO:0006420
d1f7ua3	A	Q05506	GO:0032543
d1f7ua3	A	Q05506	GO:1990825
d1f7ua3	A	Q05506	GO:0000166
d1f7ua3	A	Q05506	GO:0004812
d1f7ua3	A	Q05506	GO:0004814
d1f7ua3	A	Q05506	GO:0005524
d1f7ua3	A	Q05506	GO:0005737
d1f7ua3	A	Q05506	GO:0005739
d1f7ua3	A	Q05506	GO:0005829
d1f7ua3	A	Q05506	GO:0006412
d1f7ua3	A	Q05506	GO:0006418
d1f7ua3	A	Q05506	GO:0006420
d1f7ua3	A	Q05506	GO:0032543
d1f7ua3	A	Q05506	GO:1990825
d1f7ua3	A	Q05506	GO:0000166
d1f7ua3	A	Q05506	GO:0004812
d1f7ua3	A	Q05506	GO:0004814
d1f7ua3	A	Q05506	GO:0005524
d1f7ua3	A	Q05506	GO:0005737
d1f7ua3	A	Q05506	GO:0005739
d1f7ua3	A	Q05506	GO:0005829
d1f7ua3	A	Q05506	GO:0006412
d1f7ua3	A	Q05506	GO:0006418
d1f7ua3	A	Q05506	GO:0006420
d1f7ua3	A	Q05506	GO:0032543
d1f7ua3	A	Q05506	GO:1990825
d1f7ua3	A	Q05506	GO:0000166
d1f7ua3	A	Q05506	GO:0004812
d1f7ua3	A	Q05506	GO:0004814
d1f7ua3	A	Q05506	GO:0005524
d1f7ua3	A	Q05506	GO:0005737
d1f7ua3	A	Q05506	GO:0005739
d1f7ua3	A	Q05506	GO:0005829
d1f7ua3	A	Q05506	GO:0006412
d1f7ua3	A	Q05506	GO:0006418
d1f7ua3	A	Q05506	GO:0006420
d1f7ua3	A	Q05506	GO:0032543
d1f7ua3	A	Q05506	GO:1990825
d1f7ua3	A	Q05506	GO:0000166
d1f7ua3	A	Q05506	GO:0004812
d1f7ua3	A	Q05506	GO:0004814
d1f7ua3	A	Q05506	GO:0005524
d1f7ua3	A	Q05506	GO:0005737
d1f7ua3	A	Q05506	GO:0005739
d1f7ua3	A	Q05506	GO:0005829
d1f7ua3	A	Q05506	GO:0006412
d1f7ua3	A	Q05506	GO:0006418
d1f7ua3	A	Q05506	GO:0006420
d1f7ua3	A	Q05506	GO:0032543
d1f7ua3	A	Q05506	GO:1990825
d1iq0a3	A	Q93RP5	GO:0000166
d1iq0a3	A	Q93RP5	GO:0004812
d1iq0a3	A	Q93RP5	GO:0004814
d1iq0a3	A	Q93RP5	GO:0005524
d1iq0a3	A	Q93RP5	GO:0005737
d1iq0a3	A	Q93RP5	GO:0006412
d1iq0a3	A	Q93RP5	GO:0006418
d1iq0a3	A	Q93RP5	GO:0006420
d1iq0a3	A	Q93RP5	GO:0000166
d1iq0a3	A	Q93RP5	GO:0004812
d1iq0a3	A	Q93RP5	GO:0004814
d1iq0a3	A	Q93RP5	GO:0005524
d1iq0a3	A	Q93RP5	GO:0005737
d1iq0a3	A	Q93RP5	GO:0006412
d1iq0a3	A	Q93RP5	GO:0006418
d1iq0a3	A	Q93RP5	GO:0006420
d1iq0a3	A	Q93RP5	GO:0000166
d1iq0a3	A	Q93RP5	GO:0004812
d1iq0a3	A	Q93RP5	GO:0004814
d1iq0a3	A	Q93RP5	GO:0005524
d1iq0a3	A	Q93RP5	GO:0005737
d1iq0a3	A	Q93RP5	GO:0006412
d1iq0a3	A	Q93RP5	GO:0006418
d1iq0a3	A	Q93RP5	GO:0006420
d1iq0a3	A	Q93RP5	GO:0000166
d1iq0a3	A	Q93RP5	GO:0004812
d1iq0a3	A	Q93RP5	GO:0004814
d1iq0a3	A	Q93RP5	GO:0005524
d1iq0a3	A	Q93RP5	GO:0005737
d1iq0a3	A	Q93RP5	GO:0006412
d1iq0a3	A	Q93RP5	GO:0006418
d1iq0a3	A	Q93RP5	GO:0006420
d1iq0a3	A	Q93RP5	GO:0000166
d1iq0a3	A	Q93RP5	GO:0004812
d1iq0a3	A	Q93RP5	GO:0004814
d1iq0a3	A	Q93RP5	GO:0005524
d1iq0a3	A	Q93RP5	GO:0005737
d1iq0a3	A	Q93RP5	GO:0006412
d1iq0a3	A	Q93RP5	GO:0006418
d1iq0a3	A	Q93RP5	GO:0006420

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