PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1tkea2  (  63 )    k-deegleiirhSCAHLLGHAIkqlw-ph-TkMAiGpvidnGFyYdVdLd
d1v4pa-  (   1 )       mysievrThSALHVVkGAVvkvLgseAkwtystyvkgnkGVLiVkFd
d2e1ba2  (  88 )    dwdyryklmrIhTGLhLLehVLneVLgegnWqlvgsgmsvekGrYdIaYp
                          aaaaaaaaaaaaaaaaaaa       b        bbbbbbb  

                             60        70        80        90        100 
d1tkea2  ( 110 )    rtLtqedVeaLekrMheLAeknydVikkkVswheAretFanrgEsyKvsi
d1v4pa-  (  48 )    rkPsdeeireIerlAnekvkenapIkiyelpReeAekmf---gedMydlf
d2e1ba2  ( 138 )    enL-nkykeqIislFnkyVdeGgeVkiwweg-------------------
                           aaaaaaaaaaaa      bbbb                     

                             110       120       130       140       150 
d1tkea2  ( 160 )    Ldeniahdd-kpgLYfHee-YvDmcrGpHVpnMrfChhFkLmktagaywr
d1v4pa-  (  95 )    ---pvpedvriLkVVvIedwnvnAcnkeHTktTgeIgpIkIrkVrfrk--
d2e1ba2  ( 168 )    -------d---rryTqIrdfevipcggtHVkdIkeIghIkkLkrssigr-
                                bbbbb    bb         333   bbbbbbbbb   

                             160     
d1tkea2  ( 208 )    gdsnnkmLqrIyGtAwa
d1v4pa-  ( 140 )    ---s-kglLeIhFeLl 
d2e1ba2  ( 207 )    ------gkQrLeMwLe 
                           bbbbbbbb

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1tkea2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1tkea2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Threonyl-tRNA synthetase (ThrRS), second 'additional' domain	Threonyl-tRNA synthetase (ThrRS), second 'additional' domain	Escherichia coli [TaxId: 562]	view
d1v4pa- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1v4pa- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein PH0574	AlaX-like	Pyrococcus horikoshii [TaxId: 53953]	view
d2e1ba2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2e1ba2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	AlaX-M trans-editing enzyme, C-terminal domain	AlaX-like	Pyrococcus horikoshii [TaxId: 53953]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1tkea2	A	P0A8M3	GO:0000166
d1tkea2	A	P0A8M3	GO:0004812
d1tkea2	A	P0A8M3	GO:0005524
d1tkea2	A	P0A8M3	GO:0043039
d1tkea2	A	P0A8M3	GO:0000166
d1tkea2	A	P0A8M3	GO:0004812
d1tkea2	A	P0A8M3	GO:0005524
d1tkea2	A	P0A8M3	GO:0043039
d1v4pa_	A	O58307	GO:0000166
d1v4pa_	A	O58307	GO:0002161
d1v4pa_	A	O58307	GO:0004812
d1v4pa_	A	O58307	GO:0005524
d1v4pa_	A	O58307	GO:0005737
d1v4pa_	A	O58307	GO:0043039
d1v4pa_	A	O58307	GO:0046872
d1v4pa_	A	O58307	GO:0106074
d2e1ba2	A	O57848	GO:0000166
d2e1ba2	A	O57848	GO:0002161
d2e1ba2	A	O57848	GO:0003676
d2e1ba2	A	O57848	GO:0004812
d2e1ba2	A	O57848	GO:0004813
d2e1ba2	A	O57848	GO:0005524
d2e1ba2	A	O57848	GO:0005737
d2e1ba2	A	O57848	GO:0006419
d2e1ba2	A	O57848	GO:0043039
d2e1ba2	A	O57848	GO:0046872
d2e1ba2	A	O57848	GO:0106074
d2e1ba2	A	O57848	GO:0000166
d2e1ba2	A	O57848	GO:0002161
d2e1ba2	A	O57848	GO:0003676
d2e1ba2	A	O57848	GO:0004812
d2e1ba2	A	O57848	GO:0004813
d2e1ba2	A	O57848	GO:0005524
d2e1ba2	A	O57848	GO:0005737
d2e1ba2	A	O57848	GO:0006419
d2e1ba2	A	O57848	GO:0043039
d2e1ba2	A	O57848	GO:0046872
d2e1ba2	A	O57848	GO:0106074
d2e1ba2	A	O57848	GO:0000166
d2e1ba2	A	O57848	GO:0002161
d2e1ba2	A	O57848	GO:0003676
d2e1ba2	A	O57848	GO:0004812
d2e1ba2	A	O57848	GO:0004813
d2e1ba2	A	O57848	GO:0005524
d2e1ba2	A	O57848	GO:0005737
d2e1ba2	A	O57848	GO:0006419
d2e1ba2	A	O57848	GO:0043039
d2e1ba2	A	O57848	GO:0046872
d2e1ba2	A	O57848	GO:0106074

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