PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1d1ra1  (  29 )                            kg-dGvvriqrqtsgrkgkGvClitg
d2if1a1  (  14 )    msaiqnlhsfdpfadaskgddllpagtedyihiriqqrng-rktlttvqg
                                                                  bb  

                             60        70        80        90        100 
d1d1ra1  (  54 )    vdlddaeltklAaelkkkcgcGgavkd-----gvieiqgdkrdllkslle
d2if1a1  (  63 )    i-addydkkklvkaFkkkfacnGtviehpeygeviqlqgdqrknicqFlv
                            aaaaaaaaa      bbb       bbbb    aaaaaaaaa

                             110   
d1d1ra1  (  99 )    akgm----kvklagg
d2if1a1  ( 112 )    eiglAkddqlkvhGf
                    a

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1d1ra1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1d1ra1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	YciH	eIF1-like	Escherichia coli [TaxId: 562]		view
d2if1a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2if1a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Eukaryotic translation initiation factor eIF-1 (SUI1)	eIF1-like	Human (Homo sapiens) [TaxId: 9606]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60										70										80										90										100										110
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	K	G	-	D	G	V	V	R	I	Q	R	Q	T	S	G	R	K	G	K	G	V	C	L	I	T	G	V	D	L	D	D	A	E	L	T	K	L	A	A	E	L	K	K	K	C	G	C	G	G	A	V	K	D	-	-	-	-	-	G	V	I	E	I	Q	G	D	K	R	D	L	L	K	S	L	L	E	A	K	G	M	-	-	-	-	K	V	K	L	A	G	G
M	S	A	I	Q	N	L	H	S	F	D	P	F	A	D	A	S	K	G	D	D	L	L	P	A	G	T	E	D	Y	I	H	I	R	I	Q	Q	R	N	G	-	R	K	T	L	T	T	V	Q	G	I	-	A	D	D	Y	D	K	K	K	L	V	K	A	F	K	K	K	F	A	C	N	G	T	V	I	E	H	P	E	Y	G	E	V	I	Q	L	Q	G	D	Q	R	K	N	I	C	Q	F	L	V	E	I	G	L	A	K	D	D	Q	L	K	V	H	G	F

Member	Chain	UniProtKB	GO term

									10										20										30										40										50										60										70										80										90										100										110
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	K	G	-	D	G	V	V	R	I	Q	R	Q	T	S	G	R	K	G	K	G	V	C	L	I	T	G	V	D	L	D	D	A	E	L	T	K	L	A	A	E	L	K	K	K	C	G	C	G	G	A	V	K	D	-	-	-	-	-	G	V	I	E	I	Q	G	D	K	R	D	L	L	K	S	L	L	E	A	K	G	M	-	-	-	-	K	V	K	L	A	G	G
M	S	A	I	Q	N	L	H	S	F	D	P	F	A	D	A	S	K	G	D	D	L	L	P	A	G	T	E	D	Y	I	H	I	R	I	Q	Q	R	N	G	-	R	K	T	L	T	T	V	Q	G	I	-	A	D	D	Y	D	K	K	K	L	V	K	A	F	K	K	K	F	A	C	N	G	T	V	I	E	H	P	E	Y	G	E	V	I	Q	L	Q	G	D	Q	R	K	N	I	C	Q	F	L	V	E	I	G	L	A	K	D	D	Q	L	K	V	H	G	F

									10										20										30										40										50										60										70										80										90										100										110
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	K	G	-	D	G	V	V	R	I	Q	R	Q	T	S	G	R	K	G	K	G	V	C	L	I	T	G	V	D	L	D	D	A	E	L	T	K	L	A	A	E	L	K	K	K	C	G	C	G	G	A	V	K	D	-	-	-	-	-	G	V	I	E	I	Q	G	D	K	R	D	L	L	K	S	L	L	E	A	K	G	M	-	-	-	-	K	V	K	L	A	G	G
M	S	A	I	Q	N	L	H	S	F	D	P	F	A	D	A	S	K	G	D	D	L	L	P	A	G	T	E	D	Y	I	H	I	R	I	Q	Q	R	N	G	-	R	K	T	L	T	T	V	Q	G	I	-	A	D	D	Y	D	K	K	K	L	V	K	A	F	K	K	K	F	A	C	N	G	T	V	I	E	H	P	E	Y	G	E	V	I	Q	L	Q	G	D	Q	R	K	N	I	C	Q	F	L	V	E	I	G	L	A	K	D	D	Q	L	K	V	H	G	F

									10										20										30										40										50										60										70										80										90										100										110
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	K	G	-	D	G	V	V	R	I	Q	R	Q	T	S	G	R	K	G	K	G	V	C	L	I	T	G	V	D	L	D	D	A	E	L	T	K	L	A	A	E	L	K	K	K	C	G	C	G	G	A	V	K	D	-	-	-	-	-	G	V	I	E	I	Q	G	D	K	R	D	L	L	K	S	L	L	E	A	K	G	M	-	-	-	-	K	V	K	L	A	G	G
M	S	A	I	Q	N	L	H	S	F	D	P	F	A	D	A	S	K	G	D	D	L	L	P	A	G	T	E	D	Y	I	H	I	R	I	Q	Q	R	N	G	-	R	K	T	L	T	T	V	Q	G	I	-	A	D	D	Y	D	K	K	K	L	V	K	A	F	K	K	K	F	A	C	N	G	T	V	I	E	H	P	E	Y	G	E	V	I	Q	L	Q	G	D	Q	R	K	N	I	C	Q	F	L	V	E	I	G	L	A	K	D	D	Q	L	K	V	H	G	F