Superfamily : 55144 [ LigT-like ]
Class : Alpha and beta proteins (a+b)
Fold : LigT-like
# of Members : 6
Superposed Structure
solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x
beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x
hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x
 
                             10        20        30        40        50  
d1jh6a-  (   1 )                               meevkkdvYSVWAlPde----es
d1vgja-  (   2 )                                      rAFIAIdVne----sV
d2fsqa1  (   6 )    vskdLdyIStanhdqpprhlgsrFsaegeflpepGNtVVcHLve--gsqT
d5ae0a-  ( 162 )                                  kdflplyfgwfltkkssetl
d5h7fa-  (  36 )                                 qpstyrLFYALrVpa----dI
d5ldqa-  (   2 )                                 s-epqrLFFAIdLpa----ei
                                                       bbbbbb       aa

                             60        70        80        90        100 
d1jh6a-  (  20 )    eprFkkLMeaLrs-----------------------e--ftgprfv---P
d1vgja-  (  14 )    rdsLvraQdyIgs----------------------ke--AkIkfverenL
d2fsqa1  (  54 )    esaIvsTrqrFld---------------------peasq--LAftpvsSL
d5ae0a-  ( 182 )    rkagqvfleelgnhkafkkelrhfisgdepkeklelvsyfg-krpp-gvl
d5h7fa-  (  53 )    tapLaeaqaklg----------------------------nWravrpdqM
d5ldqa-  (  18 )    reqIihwrakhFp---------------------peA--g--rpvaadnL
                    aaaaaaaaaaa                                       

                             110       120       130       140       150 
d1jh6a-  (  42 )    HVtVAvSa--ylt----------adeAkkmFesAçd---glkAYtAtVdr
d1vgja-  (  40 )    hItLkfLg--eIt----------eeqaeeIkniLkkiAekykkheVkVkg
d2fsqa1  (  82 )    htVFqGViesrralpyWPqtlpldtpidaVTdyYrdrLstFptlpafnrv
d5ae0a-  ( 230 )    hcttkf-----cdygkaa-----gaeeyaqqevvkrsyg--kafklsisa
d5h7fa-  (  76 )    hVtLSyLp--aVp----------pervedLkrLGtrlTqdlppLhVnLrg
d5ldqa-  (  43 )    hLtLAfLg--eVs----------aekekaLsllAgrI--rQpGftLtLdd
                     bbbbbbb                  aaaaaaaaaa       bbbb  b

                             160       170       180       190       200 
d1jh6a-  (  77 )    Vstgtff--fqCVFLlLq-ttpeVmeAGehCknhF---nCst-t-t----
d1vgja-  (  78 )    IgvfpnpnyIrvIwAgIe-ndeiIre-AreIedeLaklgfkk-e-g----
d2fsqa1  ( 134 )    tgLrP-----vGvkgat---aeddsivalWRdtFAdfFgyrhpdHd----
d5ae0a-  ( 268 )    lfvtp-----ktagaqvvlt--------dqelqlwpsdldkpsaseglpp
d5h7fa-  ( 114 )    Tgyfpn-gsprvWfVkTe--AegLteLAenLragIrelgIgt-ddl----
d5ldqa-  (  79 )    Agqwl---rsrvVwLgmrqpprgLiqLAnmLrsqAarsgcfq-snr----
                    bbb        bbbbb       aa   aaaaaa                

                             210       220       230       240       250 
d1jh6a-  ( 115 )    pymPhLSLLY-AeLt-------eeekknAqekAytldssLdglsFrLnrL
d1vgja-  ( 121 )    nfvAhItLGr-Vkfv---------kdklgLtklkel-anedFgsFvVdAi
d2fsqa1  ( 174 )    tyefhitLSyIvswFepecLprwqaLdeelekLrvaAp------viqrpP
d5ae0a-  ( 305 )    gsrahvtlgcaa---dvqpvqtgldlldilqqvkggsqg--eavgelprg
d5h7fa-  ( 157 )    aFkahItLAr-KgpA---------p------Lp----plifdqswtApgL
d5ldqa-  ( 121 )    pfhphITLLrdAsea---------v-----tip----pPgfnWsyaVteF
                         bbbbb                                  bbb  b

                             260       270       280 
d1jh6a-  ( 157 )    ALCkTdtedktLetwetvavçnLnp       
d1vgja-  ( 161 )    eLkkst-ltpkgpiyetlarfeLse       
d2fsqa1  ( 220 )    AFCefk-----dnhfkelvvfd          
d5ae0a-  ( 350 )    klyslg---kgrwmlsltkkmevkaiftgyyg
d5h7fa-  ( 189 )    tLyrsi-----gpiyevqstFrFrgsas    
d5ldqa-  ( 153 )    TLyass-fargrtrytplkrwaLtq       
                    bbbbb          bbbbbbb
 

 

Domain IDNameFamilySourceDomainSTRING-DB
tRNA splicing product Appr>p cyclic nucleotide phosphodiesterasetRNA splicing product Appr>p cyclic nucleotide phosphodiesteraseThale cress (Arabidopsis thaliana) [TaxId: 3702]view
automated matchesautomated matchesPyrococcus horikoshii [TaxId: 53953]view
Putative phosphoesterase Atu0111Atu0111-likeAgrobacterium tumefaciens [TaxId: 358]view
automated matches2',3'-cyclic nucleotide 3'-phosphodiesterase, catalytic domainMouse (Mus musculus) [TaxId: 10090]view
automated matchesautomated matchesDeinococcus radiodurans [TaxId: 1299]view
automated matchesautomated matchesEscherichia coli [TaxId: 469008]view

 

No outliers

FeatureDownload
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

 

10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280
- - - - - - - - - - - - - - - - - - - - - - - - - - - M E E V K K D V Y S V W A L P D E - - - - E S E P R F K K L M E A L R S - - - - - - - - - - - - - - - - - - - - - - - E - - F T G P R F V - - - P H V T V A V S A - - Y L T - - - - - - - - - - A D E A K K M F E S A C D - - - G L K A Y T A T V D R V S T G T F F - - F Q C V F L L L Q - T T P E V M E A G E H C K N H F - - - N C S T - T - T - - - - P Y M P H L S L L Y - A E L T - - - - - - - E E E K K N A Q E K A Y T L D S S L D G L S F R L N R L A L C K T D T E D K T L E T W E T V A V C N L N P - - - - - - -
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - R A F I A I D V N E - - - - S V R D S L V R A Q D Y I G S - - - - - - - - - - - - - - - - - - - - - - K E - - A K I K F V E R E N L H I T L K F L G - - E I T - - - - - - - - - - E E Q A E E I K N I L K K I A E K Y K K H E V K V K G I G V F P N P N Y I R V I W A G I E - N D E I I R E - A R E I E D E L A K L G F K K - E - G - - - - N F V A H I T L G R - V K F V - - - - - - - - - K D K L G L T K L K E L - A N E D F G S F V V D A I E L K K S T - L T P K G P I Y E T L A R F E L S E - - - - - - -
V S K D L D Y I S T A N H D Q P P R H L G S R F S A E G E F L P E P G N T V V C H L V E - - G S Q T E S A I V S T R Q R F L D - - - - - - - - - - - - - - - - - - - - - P E A S Q - - L A F T P V S S L H T V F Q G V I E S R R A L P Y W P Q T L P L D T P I D A V T D Y Y R D R L S T F P T L P A F N R V T G L R P - - - - - V G V K G A T - - - A E D D S I V A L W R D T F A D F F G Y R H P D H D - - - - T Y E F H I T L S Y I V S W F E P E C L P R W Q A L D E E L E K L R V A A P - - - - - - V I Q R P P A F C E F K - - - - - D N H F K E L V V F D - - - - - - - - - -
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - K D F L P L Y F G W F L T K K S S E T L R K A G Q V F L E E L G N H K A F K K E L R H F I S G D E P K E K L E L V S Y F G - K R P P - G V L H C T T K F - - - - - C D Y G K A A - - - - - G A E E Y A Q Q E V V K R S Y G - - K A F K L S I S A L F V T P - - - - - K T A G A Q V V L T - - - - - - - - D Q E L Q L W P S D L D K P S A S E G L P P G S R A H V T L G C A A - - - D V Q P V Q T G L D L L D I L Q Q V K G G S Q G - - E A V G E L P R G K L Y S L G - - - K G R W M L S L T K K M E V K A I F T G Y Y G
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - Q P S T Y R L F Y A L R V P A - - - - D I T A P L A E A Q A K L G - - - - - - - - - - - - - - - - - - - - - - - - - - - - N W R A V R P D Q M H V T L S Y L P - - A V P - - - - - - - - - - P E R V E D L K R L G T R L T Q D L P P L H V N L R G T G Y F P N - G S P R V W F V K T E - - A E G L T E L A E N L R A G I R E L G I G T - D D L - - - - A F K A H I T L A R - K G P A - - - - - - - - - P - - - - - - L P - - - - P L I F D Q S W T A P G L T L Y R S I - - - - - G P I Y E V Q S T F R F R G S A S - - - -
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - S - E P Q R L F F A I D L P A - - - - E I R E Q I I H W R A K H F P - - - - - - - - - - - - - - - - - - - - - P E A - - G - - R P V A A D N L H L T L A F L G - - E V S - - - - - - - - - - A E K E K A L S L L A G R I - - R Q P G F T L T L D D A G Q W L - - - R S R V V W L G M R Q P P R G L I Q L A N M L R S Q A A R S G C F Q - S N R - - - - P F H P H I T L L R D A S E A - - - - - - - - - V - - - - - T I P - - - - P P G F N W S Y A V T E F T L Y A S S - F A R G R T R Y T P L K R W A L T Q - - - - - - -

 

 

 

 

 

Member Chain UniProtKB GO term
d1jh6a_ A O04147 GO:0004112
d1jh6a_ A O04147 GO:0005737
d1jh6a_ A O04147 GO:0005829
d1jh6a_ A O04147 GO:0006388
d1jh6a_ A O04147 GO:0016787
 
Contact: Prof. R. Sowdhamini - mini@ncbs.res.in