PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1d5ya3  ( 122 )                        eftmpehkfvtledtpLiGvtqsyscsleq
d1jyha-  (   1 )                            mnyeikqeekrtVAGfhlvg--pwe-
d1r8ea2  ( 121 )                           lgeVfvldeeeirIIqteAegigPenv
d2gova1  (   7 )    nslfgsvetwpwqvl--stgGkedvsyeeraCEgGkFAtvevtdkpvdeA
d3r8ja-  (  19 )         avetPgwkapedagpqpg--sYeiRhygpakWVSTsvesmdwdsA
                                               bbbbb  bbbbbbbbb       

                             60        70        80        90        100 
d1d5ya3  ( 152 )    isdfRhemryqfwhdFlgnAptiPpvLyGLnetrpsqdkddeqevfYTTA
d1jyha-  (  24 )    --qtvkkGfeqLmmwVdsk-nivpkewVAVyydnpdetpaek--LrCDTV
d1r8ea2  ( 148 )    lnasYskLkkfIesaDg----ftNnsyGATFsfqpytside--MtYrhIF
d2gova1  (  55 )    lreAmpkimkYvggtndkgvgmgMtvpvSfavfPne---dgslqkklkvw
d3r8ja-  (  62 )    iqtGftkLnsYiqgkNekemkIkmTAPVTSyvepgs--gpfs-estItIS
                      aaaaaaaaaaa              bbbb              bbbbb

                             110       120       130       140       150 
d1d5ya3  ( 202 )    La-qdqA-----dgyVltGhpvmLqggeYVmFtyegl--gtgvqeFiltV
d1jyha-  (  69 )    VTVpgyf---tlpenSegVilteItggqYAVAvarVv--gddfakPwyqF
d1r8ea2  ( 192 )    Tpvltn---kqissitpdMeittIpkgrYAcIaYnfs--pehYflNLqkL
d2gova1  ( 102 )    FriPnqfqGspPapsdesvkieeregitvYStqfggyAkeadyvaHAtql
d3r8ja-  ( 109 )    LyIPseqqfdPPrPlesdVfiedraemtVFVrsFdgfSsaqkNqeqlltL
                    bb                 bbbbb  bbbbbbbb        aaaaaaaa

                             160       170       180       190  
d1d5ya3  ( 244 )    ygtCmpmln-ltrrkgQdIEryypaeddrpinlrCeLLIPIrr 
d1jyha-  ( 114 )    fn-sLlqdsayemlpkpcFEVylnnGaedg-ywdIeMYVAVqpk
d1r8ea2  ( 237 )    ik-yIadrq-ltvvsdVyEliipihyspkqeeyrVeMKIrIa  
d2gova1  ( 152 )    rt-tlegt-patyqgdvYyCAgydppmkpygrrnEvwlvka   
d3r8ja-  ( 159 )    as-iLred-gkvFdekvyYTAgYnspvkllnrnNEVWliqk--n
                    aa aa            bbbbb           bbbbbb

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1d5ya3 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1d5ya3 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Rob transcription factor, C-terminal domain	Rob transcription factor, C-terminal domain	Escherichia coli [TaxId: 562]	view
d1jyha- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1jyha- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Gyrase inhibitory protein GyrI (SbmC, YeeB)	Gyrase inhibitory protein GyrI (SbmC, YeeB)	Escherichia coli [TaxId: 562]	view
d1r8ea2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1r8ea2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Multidrug-binding domain of transcription activator BmrR	Multidrug-binding domain of transcription activator BmrR	Bacillus subtilis [TaxId: 1423]	view
d2gova1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2gova1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Heme-binding protein 1	SOUL heme-binding protein	Mouse (Mus musculus) [TaxId: 10090]	view
d3r8ja- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3r8ja- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Human (Homo sapiens) [TaxId: 9606]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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N	S	L	F	G	S	V	E	T	W	P	W	Q	V	L	-	-	S	T	G	G	K	E	D	V	S	Y	E	E	R	A	C	E	G	G	K	F	A	T	V	E	V	T	D	K	P	V	D	E	A	L	R	E	A	M	P	K	I	M	K	Y	V	G	G	T	N	D	K	G	V	G	M	G	M	T	V	P	V	S	F	A	V	F	P	N	E	-	-	-	D	G	S	L	Q	K	K	L	K	V	W	F	R	I	P	N	Q	F	Q	G	S	P	P	A	P	S	D	E	S	V	K	I	E	E	R	E	G	I	T	V	Y	S	T	Q	F	G	G	Y	A	K	E	A	D	Y	V	A	H	A	T	Q	L	R	T	-	T	L	E	G	T	-	P	A	T	Y	Q	G	D	V	Y	Y	C	A	G	Y	D	P	P	M	K	P	Y	G	R	R	N	E	V	W	L	V	K	A	-	-	-
-	-	-	-	-	A	V	E	T	P	G	W	K	A	P	E	D	A	G	P	Q	P	G	-	-	S	Y	E	I	R	H	Y	G	P	A	K	W	V	S	T	S	V	E	S	M	D	W	D	S	A	I	Q	T	G	F	T	K	L	N	S	Y	I	Q	G	K	N	E	K	E	M	K	I	K	M	T	A	P	V	T	S	Y	V	E	P	G	S	-	-	G	P	F	S	-	E	S	T	I	T	I	S	L	Y	I	P	S	E	Q	Q	F	D	P	P	R	P	L	E	S	D	V	F	I	E	D	R	A	E	M	T	V	F	V	R	S	F	D	G	F	S	S	A	Q	K	N	Q	E	Q	L	L	T	L	A	S	-	I	L	R	E	D	-	G	K	V	F	D	E	K	V	Y	Y	T	A	G	Y	N	S	P	V	K	L	L	N	R	N	N	E	V	W	L	I	Q	K	-	-	N

Member	Chain	UniProtKB	GO term
d1d5ya3	A	P0ACI0	GO:0003677
d1d5ya3	A	P0ACI0	GO:0003700
d1d5ya3	A	P0ACI0	GO:0005829
d1d5ya3	A	P0ACI0	GO:0006355
d1d5ya3	A	P0ACI0	GO:0043565
d1d5ya3	A	P0ACI0	GO:0003677
d1d5ya3	A	P0ACI0	GO:0003700
d1d5ya3	A	P0ACI0	GO:0005829
d1d5ya3	A	P0ACI0	GO:0006355
d1d5ya3	A	P0ACI0	GO:0043565
d1jyha_	A	P33012	GO:0005737
d1jyha_	A	P33012	GO:0006974
d1jyha_	A	P33012	GO:0008657
d1jyha_	A	P33012	GO:2000104
d1jyha_	A	P33012	GO:2000372
d1r8ea2	A	P39075	GO:0003677
d1r8ea2	A	P39075	GO:0003700
d1r8ea2	A	P39075	GO:0006355
d1r8ea2	A	P39075	GO:0003677
d1r8ea2	A	P39075	GO:0003700
d1r8ea2	A	P39075	GO:0006355
d1r8ea2	A	P39075	GO:0003677
d1r8ea2	A	P39075	GO:0003700
d1r8ea2	A	P39075	GO:0006355
d2gova1	A	Q9R257	GO:0005737
d2gova1	A	Q9R257	GO:0005739
d2gova1	A	Q9R257	GO:0005829
d2gova1	A	Q9R257	GO:0020037
d2gova1	A	Q9R257	GO:0042168

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N	S	L	F	G	S	V	E	T	W	P	W	Q	V	L	-	-	S	T	G	G	K	E	D	V	S	Y	E	E	R	A	C	E	G	G	K	F	A	T	V	E	V	T	D	K	P	V	D	E	A	L	R	E	A	M	P	K	I	M	K	Y	V	G	G	T	N	D	K	G	V	G	M	G	M	T	V	P	V	S	F	A	V	F	P	N	E	-	-	-	D	G	S	L	Q	K	K	L	K	V	W	F	R	I	P	N	Q	F	Q	G	S	P	P	A	P	S	D	E	S	V	K	I	E	E	R	E	G	I	T	V	Y	S	T	Q	F	G	G	Y	A	K	E	A	D	Y	V	A	H	A	T	Q	L	R	T	-	T	L	E	G	T	-	P	A	T	Y	Q	G	D	V	Y	Y	C	A	G	Y	D	P	P	M	K	P	Y	G	R	R	N	E	V	W	L	V	K	A	-	-	-
-	-	-	-	-	A	V	E	T	P	G	W	K	A	P	E	D	A	G	P	Q	P	G	-	-	S	Y	E	I	R	H	Y	G	P	A	K	W	V	S	T	S	V	E	S	M	D	W	D	S	A	I	Q	T	G	F	T	K	L	N	S	Y	I	Q	G	K	N	E	K	E	M	K	I	K	M	T	A	P	V	T	S	Y	V	E	P	G	S	-	-	G	P	F	S	-	E	S	T	I	T	I	S	L	Y	I	P	S	E	Q	Q	F	D	P	P	R	P	L	E	S	D	V	F	I	E	D	R	A	E	M	T	V	F	V	R	S	F	D	G	F	S	S	A	Q	K	N	Q	E	Q	L	L	T	L	A	S	-	I	L	R	E	D	-	G	K	V	F	D	E	K	V	Y	Y	T	A	G	Y	N	S	P	V	K	L	L	N	R	N	N	E	V	W	L	I	Q	K	-	-	N

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-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	E	F	T	M	P	E	H	K	F	V	T	L	E	D	T	P	L	I	G	V	T	Q	S	Y	S	C	S	L	E	Q	I	S	D	F	R	H	E	M	R	Y	Q	F	W	H	D	F	L	G	N	A	P	T	I	P	P	V	L	Y	G	L	N	E	T	R	P	S	Q	D	K	D	D	E	Q	E	V	F	Y	T	T	A	L	A	-	Q	D	Q	A	-	-	-	-	-	D	G	Y	V	L	T	G	H	P	V	M	L	Q	G	G	E	Y	V	M	F	T	Y	E	G	L	-	-	G	T	G	V	Q	E	F	I	L	T	V	Y	G	T	C	M	P	M	L	N	-	L	T	R	R	K	G	Q	D	I	E	R	Y	Y	P	A	E	D	D	R	P	I	N	L	R	C	E	L	L	I	P	I	R	R	-
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									10										20										30										40										50										60										70										80										90										100										110										120										130										140										150										160										170										180										190
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-	-	-	-	-	A	V	E	T	P	G	W	K	A	P	E	D	A	G	P	Q	P	G	-	-	S	Y	E	I	R	H	Y	G	P	A	K	W	V	S	T	S	V	E	S	M	D	W	D	S	A	I	Q	T	G	F	T	K	L	N	S	Y	I	Q	G	K	N	E	K	E	M	K	I	K	M	T	A	P	V	T	S	Y	V	E	P	G	S	-	-	G	P	F	S	-	E	S	T	I	T	I	S	L	Y	I	P	S	E	Q	Q	F	D	P	P	R	P	L	E	S	D	V	F	I	E	D	R	A	E	M	T	V	F	V	R	S	F	D	G	F	S	S	A	Q	K	N	Q	E	Q	L	L	T	L	A	S	-	I	L	R	E	D	-	G	K	V	F	D	E	K	V	Y	Y	T	A	G	Y	N	S	P	V	K	L	L	N	R	N	N	E	V	W	L	I	Q	K	-	-	N