PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1qd1a1  (   2 )    sqlVeCvPnFSeGknqevIdaIsraVa----qTpgCvlldvdsgpstnRT
d1qd1a2  ( 181 )       flLaFNINLlstreqAhrIAldLreqggrLkkVqA-iGwyldeknlA
                         b  bb     aaaaaaaaaaa          bb bbbbb    bb

                             60        70        80        90        100 
d1qd1a1  (  48 )    vYtFvg-rPed--VVeGALnAAraAyqlIdMsrhhgehpRMGALDvCPFi
d1qd1a2  ( 233 )    QVsTnLldfevtGLhtVfeeTcreAqel--------------slpvvgSq
                    bbbbbb       aaaaaaaaaaaaaa                  bbbbb

                             110       120       130       140       150 
d1qd1a1  (  95 )    pvrgVtmdeCvrCAqaFGqrLAeelgVPVYLygeAArtagrqslpaLrag
d1qd1a2  ( 269 )    Lvg----lVplkALldAAafYcekenl-fll-----------qdehrIrl
                    bb        aaaaaaaaaaaaaaa                  aaaaa  

                             160       170       180       
d1qd1a1  ( 145 )    eyeaLpekLkqaewaPDfgpsafvpsWGATVAGArk   
d1qd1a2  ( 303 )    VvnrLgLdsla----------pFkpk-----erIieylv
                    aaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1qd1a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1qd1a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Formiminotransferase domain of formiminotransferase-cyclodeaminase.	Formiminotransferase domain of formiminotransferase-cyclodeaminase.	Pig (Sus scrofa) [TaxId: 9823]		view
d1qd1a2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1qd1a2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Formiminotransferase domain of formiminotransferase-cyclodeaminase.	Formiminotransferase domain of formiminotransferase-cyclodeaminase.	Pig (Sus scrofa) [TaxId: 9823]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1qd1a1	A	P53603	GO:0005542
d1qd1a1	A	P53603	GO:0016740
d1qd1a1	A	P53603	GO:0005542
d1qd1a1	A	P53603	GO:0016740
d1qd1a2	A	P53603	GO:0005542
d1qd1a2	A	P53603	GO:0016740
d1qd1a2	A	P53603	GO:0005542
d1qd1a2	A	P53603	GO:0016740

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