PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1ftra1  (   1 )     meingveiedtfaeafeakmarvLITAashkwAmiAVkeATgfGtsvi-
d1ftra2  ( 149 )    egef---ivedsfgittgVaggnFyIMAesqpaGlqAAeaAvdaIkgveg
                                       bbbbbbbb   aaaaaaaaaaaa        

                             60        70        80        90        100 
d1ftra1  (  49 )    -------mcpAeAgidcg-------yvppeeTPdg----------rpGVt
d1ftra2  ( 196 )    AyApfpgGivasaskvgSkqydflpastndaycptvedneLpegVkcVye
                                 bbb         bb  33                bbb

                             110       120       130       140       150 
d1ftra1  (  75 )    ImIGhndedelkeqlldrigqcVmtaptA-safdampe-aekededrvgy
d1ftra2  ( 246 )    IvInGlneeaVkeAMrvGIe-aAcqqpgVvkisagnfggklgqyeihlhd
                    bbbbb  aaaaaaaaaaaaa a        bbb                 

                             160       170    
d1ftra1  ( 123 )    klSffGdgyqeedeldgrkvwkipvv
d1ftra2  ( 295 )    Lf

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1ftra1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1ftra1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Formylmethanofuran:tetrahydromethanopterin formyltransferase	Formylmethanofuran:tetrahydromethanopterin formyltransferase	Methanopyrus kandleri [TaxId: 2320]		view
d1ftra2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1ftra2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Formylmethanofuran:tetrahydromethanopterin formyltransferase	Formylmethanofuran:tetrahydromethanopterin formyltransferase	Methanopyrus kandleri [TaxId: 2320]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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E	G	E	F	-	-	-	I	V	E	D	S	F	G	I	T	T	G	V	A	G	G	N	F	Y	I	M	A	E	S	Q	P	A	G	L	Q	A	A	E	A	A	V	D	A	I	K	G	V	E	G	A	Y	A	P	F	P	G	G	I	V	A	S	A	S	K	V	G	S	K	Q	Y	D	F	L	P	A	S	T	N	D	A	Y	C	P	T	V	E	D	N	E	L	P	E	G	V	K	C	V	Y	E	I	V	I	N	G	L	N	E	E	A	V	K	E	A	M	R	V	G	I	E	-	A	A	C	Q	Q	P	G	V	V	K	I	S	A	G	N	F	G	G	K	L	G	Q	Y	E	I	H	L	H	D	L	F	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Member	Chain	UniProtKB	GO term
d1ftra1	A	Q49610	GO:0005737
d1ftra1	A	Q49610	GO:0006730
d1ftra1	A	Q49610	GO:0015948
d1ftra1	A	Q49610	GO:0016740
d1ftra1	A	Q49610	GO:0016746
d1ftra1	A	Q49610	GO:0019386
d1ftra1	A	Q49610	GO:0030270
d1ftra1	A	Q49610	GO:0005737
d1ftra1	A	Q49610	GO:0006730
d1ftra1	A	Q49610	GO:0015948
d1ftra1	A	Q49610	GO:0016740
d1ftra1	A	Q49610	GO:0016746
d1ftra1	A	Q49610	GO:0019386
d1ftra1	A	Q49610	GO:0030270
d1ftra2	A	Q49610	GO:0005737
d1ftra2	A	Q49610	GO:0006730
d1ftra2	A	Q49610	GO:0015948
d1ftra2	A	Q49610	GO:0016740
d1ftra2	A	Q49610	GO:0016746
d1ftra2	A	Q49610	GO:0019386
d1ftra2	A	Q49610	GO:0030270
d1ftra2	A	Q49610	GO:0005737
d1ftra2	A	Q49610	GO:0006730
d1ftra2	A	Q49610	GO:0015948
d1ftra2	A	Q49610	GO:0016740
d1ftra2	A	Q49610	GO:0016746
d1ftra2	A	Q49610	GO:0019386
d1ftra2	A	Q49610	GO:0030270

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E	G	E	F	-	-	-	I	V	E	D	S	F	G	I	T	T	G	V	A	G	G	N	F	Y	I	M	A	E	S	Q	P	A	G	L	Q	A	A	E	A	A	V	D	A	I	K	G	V	E	G	A	Y	A	P	F	P	G	G	I	V	A	S	A	S	K	V	G	S	K	Q	Y	D	F	L	P	A	S	T	N	D	A	Y	C	P	T	V	E	D	N	E	L	P	E	G	V	K	C	V	Y	E	I	V	I	N	G	L	N	E	E	A	V	K	E	A	M	R	V	G	I	E	-	A	A	C	Q	Q	P	G	V	V	K	I	S	A	G	N	F	G	G	K	L	G	Q	Y	E	I	H	L	H	D	L	F	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

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-	M	E	I	N	G	V	E	I	E	D	T	F	A	E	A	F	E	A	K	M	A	R	V	L	I	T	A	A	S	H	K	W	A	M	I	A	V	K	E	A	T	G	F	G	T	S	V	I	-	-	-	-	-	-	-	-	M	C	P	A	E	A	G	I	D	C	G	-	-	-	-	-	-	-	Y	V	P	P	E	E	T	P	D	G	-	-	-	-	-	-	-	-	-	-	R	P	G	V	T	I	M	I	G	H	N	D	E	D	E	L	K	E	Q	L	L	D	R	I	G	Q	C	V	M	T	A	P	T	A	-	S	A	F	D	A	M	P	E	-	A	E	K	E	D	E	D	R	V	G	Y	K	L	S	F	F	G	D	G	Y	Q	E	E	D	E	L	D	G	R	K	V	W	K	I	P	V	V
E	G	E	F	-	-	-	I	V	E	D	S	F	G	I	T	T	G	V	A	G	G	N	F	Y	I	M	A	E	S	Q	P	A	G	L	Q	A	A	E	A	A	V	D	A	I	K	G	V	E	G	A	Y	A	P	F	P	G	G	I	V	A	S	A	S	K	V	G	S	K	Q	Y	D	F	L	P	A	S	T	N	D	A	Y	C	P	T	V	E	D	N	E	L	P	E	G	V	K	C	V	Y	E	I	V	I	N	G	L	N	E	E	A	V	K	E	A	M	R	V	G	I	E	-	A	A	C	Q	Q	P	G	V	V	K	I	S	A	G	N	F	G	G	K	L	G	Q	Y	E	I	H	L	H	D	L	F	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

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E	G	E	F	-	-	-	I	V	E	D	S	F	G	I	T	T	G	V	A	G	G	N	F	Y	I	M	A	E	S	Q	P	A	G	L	Q	A	A	E	A	A	V	D	A	I	K	G	V	E	G	A	Y	A	P	F	P	G	G	I	V	A	S	A	S	K	V	G	S	K	Q	Y	D	F	L	P	A	S	T	N	D	A	Y	C	P	T	V	E	D	N	E	L	P	E	G	V	K	C	V	Y	E	I	V	I	N	G	L	N	E	E	A	V	K	E	A	M	R	V	G	I	E	-	A	A	C	Q	Q	P	G	V	V	K	I	S	A	G	N	F	G	G	K	L	G	Q	Y	E	I	H	L	H	D	L	F	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-