PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1fvga-  (  27 )    kivspqeAlpGrkeplvVaakHhvngnrTvepfpe---gTqAVFGgcFwg
d3pima1  (   2 )                           ssliSktIkydpakDkLITLACgcFwg
d4gwba-  (   2 )                                      t---krAVLAgGcFwG
                                                            bbbb      

                             60        70        80        90        100 
d1fvga-  (  76 )    aErkFWt--lkgVySTQVGFAGGyTpnPtykeVcsgkTGHAEVVrVVFqp
d3pima1  (  29 )    TehmYrkylndrIvdCkVGYANGeesy---krVÇgGdtdFAEVLQVSYnp
d4gwba-  (  16 )    Qdl-Irk--lpGVieTrVGYTGgdvpnAtyr----nhgtHAEGieIiFdp
                                  bbbbbbb                   bbbbbbbb  

                             110       120       130       140       150 
d1fvga-  ( 124 )    ehisFeeLLkvFWenhdPtqg-rqgndhgsqyrSAIYPtsaehvgaAlks
d3pima1  (  85 )    kvItLreLTdfFFrihdPttsns-----gtqyrsGLFAhsdaDlkeLakI
d4gwba-  (  59 )    erisYrrILelFFqIHdPTtkdrQgndigtsyrSAIYyvddeQkriAqeT
                        aaaaaaaa                 333  bb    aaaaaaaaaa

                             160       170       180       190       200 
d1fvga-  ( 174 )    kedyqkvlsehgfglItTdIregqtFyyAedyHqQyLskdpdgyc     
d3pima1  ( 135 )    keewqpkw---gn-kIaTvIepIknFyDaeeYhqlyLdknpqGy-----a
d4gwba-  ( 109 )    iadVeasglWp--gkVvTevepvrdFweAepehqnyLerypngytcHfpr
                    aaaa              bb      bb       a              

                             
d1fvga-                      
d3pima1  ( 176 )    ÇpThylrem
d4gwba-  ( 157 )    pnwvLprrs

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1fvga- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1fvga- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Peptide methionine sulfoxide reductase	Peptide methionine sulfoxide reductase	Cow (Bos taurus) [TaxId: 9913]	view
d3pima1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3pima1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]	view
d4gwba- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4gwba- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	Peptide methionine sulfoxide reductase	Sinorhizobium meliloti [TaxId: 266834]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1fvga_	A	P54149	GO:0008113
d1fvga_	A	P54149	GO:0008113

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