PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2ekna-  (  12 )    gvkmveigykdvVfRkAvAkGrIkLkpeTVklIkegkIekgnVlatAqia
d3jqka-  (  10 )    rprmvdvtekpetfrtAtAeAFVeLteeAlsaLekg---kgdPlvvAqla
                                bbbbbbbbbbbb  aaaaaaaaa       aaaaaaaa

                             60        70        80        90        100 
d2ekna-  (  62 )    GilaVkrTpeliplchpIpitgvdItfdfg--edyIeVtCeVrAyyktGV
d3jqka-  (  60 )    GilAAkkTadliplchplpltgveVrVellkaekrVrIeAtVkTkaetgV
                    aaaaaaaaaaa          bbbbbbbb     bbbbbbbbbbbb    

                             110       120       130       140       150 
d2ekna-  ( 110 )    emEAltGVtvALlaIwdmVkavEkdekgqypyTrienvhvvekvkth   
d3jqka-  ( 110 )    emEAmtACavAAltVydMLkaask-------gLvisqvrllhkaggksge
                    aaaaaaaaaaaaaaaaaaa              bbbbbbbbbbb      

                       
d2ekna-                
d3jqka-  ( 153 )    wrr

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d2ekna- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2ekna- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Pyrococcus horikoshii OT3 [TaxId: 70601]		view
d3jqka- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3jqka- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Thermus thermophilus HB8 [TaxId: 300852]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60										70										80										90										100										110										120										130										140										150
G	V	K	M	V	E	I	G	Y	K	D	V	V	F	R	K	A	V	A	K	G	R	I	K	L	K	P	E	T	V	K	L	I	K	E	G	K	I	E	K	G	N	V	L	A	T	A	Q	I	A	G	I	L	A	V	K	R	T	P	E	L	I	P	L	C	H	P	I	P	I	T	G	V	D	I	T	F	D	F	G	-	-	E	D	Y	I	E	V	T	C	E	V	R	A	Y	Y	K	T	G	V	E	M	E	A	L	T	G	V	T	V	A	L	L	A	I	W	D	M	V	K	A	V	E	K	D	E	K	G	Q	Y	P	Y	T	R	I	E	N	V	H	V	V	E	K	V	K	T	H	-	-	-	-	-	-
R	P	R	M	V	D	V	T	E	K	P	E	T	F	R	T	A	T	A	E	A	F	V	E	L	T	E	E	A	L	S	A	L	E	K	G	-	-	-	K	G	D	P	L	V	V	A	Q	L	A	G	I	L	A	A	K	K	T	A	D	L	I	P	L	C	H	P	L	P	L	T	G	V	E	V	R	V	E	L	L	K	A	E	K	R	V	R	I	E	A	T	V	K	T	K	A	E	T	G	V	E	M	E	A	M	T	A	C	A	V	A	A	L	T	V	Y	D	M	L	K	A	A	S	K	-	-	-	-	-	-	-	G	L	V	I	S	Q	V	R	L	L	H	K	A	G	G	K	S	G	E	W	R	R

Member	Chain	UniProtKB	GO term

									10										20										30										40										50										60										70										80										90										100										110										120										130										140										150
G	V	K	M	V	E	I	G	Y	K	D	V	V	F	R	K	A	V	A	K	G	R	I	K	L	K	P	E	T	V	K	L	I	K	E	G	K	I	E	K	G	N	V	L	A	T	A	Q	I	A	G	I	L	A	V	K	R	T	P	E	L	I	P	L	C	H	P	I	P	I	T	G	V	D	I	T	F	D	F	G	-	-	E	D	Y	I	E	V	T	C	E	V	R	A	Y	Y	K	T	G	V	E	M	E	A	L	T	G	V	T	V	A	L	L	A	I	W	D	M	V	K	A	V	E	K	D	E	K	G	Q	Y	P	Y	T	R	I	E	N	V	H	V	V	E	K	V	K	T	H	-	-	-	-	-	-
R	P	R	M	V	D	V	T	E	K	P	E	T	F	R	T	A	T	A	E	A	F	V	E	L	T	E	E	A	L	S	A	L	E	K	G	-	-	-	K	G	D	P	L	V	V	A	Q	L	A	G	I	L	A	A	K	K	T	A	D	L	I	P	L	C	H	P	L	P	L	T	G	V	E	V	R	V	E	L	L	K	A	E	K	R	V	R	I	E	A	T	V	K	T	K	A	E	T	G	V	E	M	E	A	M	T	A	C	A	V	A	A	L	T	V	Y	D	M	L	K	A	A	S	K	-	-	-	-	-	-	-	G	L	V	I	S	Q	V	R	L	L	H	K	A	G	G	K	S	G	E	W	R	R

									10										20										30										40										50										60										70										80										90										100										110										120										130										140										150
G	V	K	M	V	E	I	G	Y	K	D	V	V	F	R	K	A	V	A	K	G	R	I	K	L	K	P	E	T	V	K	L	I	K	E	G	K	I	E	K	G	N	V	L	A	T	A	Q	I	A	G	I	L	A	V	K	R	T	P	E	L	I	P	L	C	H	P	I	P	I	T	G	V	D	I	T	F	D	F	G	-	-	E	D	Y	I	E	V	T	C	E	V	R	A	Y	Y	K	T	G	V	E	M	E	A	L	T	G	V	T	V	A	L	L	A	I	W	D	M	V	K	A	V	E	K	D	E	K	G	Q	Y	P	Y	T	R	I	E	N	V	H	V	V	E	K	V	K	T	H	-	-	-	-	-	-
R	P	R	M	V	D	V	T	E	K	P	E	T	F	R	T	A	T	A	E	A	F	V	E	L	T	E	E	A	L	S	A	L	E	K	G	-	-	-	K	G	D	P	L	V	V	A	Q	L	A	G	I	L	A	A	K	K	T	A	D	L	I	P	L	C	H	P	L	P	L	T	G	V	E	V	R	V	E	L	L	K	A	E	K	R	V	R	I	E	A	T	V	K	T	K	A	E	T	G	V	E	M	E	A	M	T	A	C	A	V	A	A	L	T	V	Y	D	M	L	K	A	A	S	K	-	-	-	-	-	-	-	G	L	V	I	S	Q	V	R	L	L	H	K	A	G	G	K	S	G	E	W	R	R

									10										20										30										40										50										60										70										80										90										100										110										120										130										140										150
G	V	K	M	V	E	I	G	Y	K	D	V	V	F	R	K	A	V	A	K	G	R	I	K	L	K	P	E	T	V	K	L	I	K	E	G	K	I	E	K	G	N	V	L	A	T	A	Q	I	A	G	I	L	A	V	K	R	T	P	E	L	I	P	L	C	H	P	I	P	I	T	G	V	D	I	T	F	D	F	G	-	-	E	D	Y	I	E	V	T	C	E	V	R	A	Y	Y	K	T	G	V	E	M	E	A	L	T	G	V	T	V	A	L	L	A	I	W	D	M	V	K	A	V	E	K	D	E	K	G	Q	Y	P	Y	T	R	I	E	N	V	H	V	V	E	K	V	K	T	H	-	-	-	-	-	-
R	P	R	M	V	D	V	T	E	K	P	E	T	F	R	T	A	T	A	E	A	F	V	E	L	T	E	E	A	L	S	A	L	E	K	G	-	-	-	K	G	D	P	L	V	V	A	Q	L	A	G	I	L	A	A	K	K	T	A	D	L	I	P	L	C	H	P	L	P	L	T	G	V	E	V	R	V	E	L	L	K	A	E	K	R	V	R	I	E	A	T	V	K	T	K	A	E	T	G	V	E	M	E	A	M	T	A	C	A	V	A	A	L	T	V	Y	D	M	L	K	A	A	S	K	-	-	-	-	-	-	-	G	L	V	I	S	Q	V	R	L	L	H	K	A	G	G	K	S	G	E	W	R	R