PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1hwla1  ( 587 )    GmTrGPvVrLpracdSaeVkawLetseGfavIkeaFdstsr-----fArL
d4i6ya2  ( 111 )    lmhAqVqIvgiq--dPlnArlsLlr--rkdeIielAnrkdqllnslgGGC
                     bbb  bbb      aaaaaaaa     aaaaaaaaa           bb

                             60        70        80        90        100 
d1hwla1  ( 632 )    qkLhTsia-----grnLyIRFqSrSgdamgmnmIskGTekALskLheyfp
d4i6ya2  ( 157 )    rdIeVhtfadtprgpmLvAhLIVdvrdamGantVntMAeaVaplMeaITg
                    bbbbbbbb       bbbbbbbbb      aaaaaaaaaaaaaaaaaa  

                             110       120     
d1hwla1  ( 677 )    eMqilavsgnyCTdkkpaainwiegrg
d4i6ya2  ( 207 )    -GqVrlrilsn-----ladl       
                      bbbb

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1hwla1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1hwla1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	NAD-binding domain of HMG-CoA reductase	NAD-binding domain of HMG-CoA reductase	Human (Homo sapiens) [TaxId: 9606]		view
d4i6ya2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4i6ya2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	NAD-binding domain of HMG-CoA reductase	NAD-binding domain of HMG-CoA reductase	Pseudomonas mevalonii [TaxId: 32044]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60										70										80										90										100										110										120
G	M	T	R	G	P	V	V	R	L	P	R	A	C	D	S	A	E	V	K	A	W	L	E	T	S	E	G	F	A	V	I	K	E	A	F	D	S	T	S	R	-	-	-	-	-	F	A	R	L	Q	K	L	H	T	S	I	A	-	-	-	-	-	G	R	N	L	Y	I	R	F	Q	S	R	S	G	D	A	M	G	M	N	M	I	S	K	G	T	E	K	A	L	S	K	L	H	E	Y	F	P	E	M	Q	I	L	A	V	S	G	N	Y	C	T	D	K	K	P	A	A	I	N	W	I	E	G	R	G
L	M	H	A	Q	V	Q	I	V	G	I	Q	-	-	D	P	L	N	A	R	L	S	L	L	R	-	-	R	K	D	E	I	I	E	L	A	N	R	K	D	Q	L	L	N	S	L	G	G	G	C	R	D	I	E	V	H	T	F	A	D	T	P	R	G	P	M	L	V	A	H	L	I	V	D	V	R	D	A	M	G	A	N	T	V	N	T	M	A	E	A	V	A	P	L	M	E	A	I	T	G	-	G	Q	V	R	L	R	I	L	S	N	-	-	-	-	-	L	A	D	L	-	-	-	-	-	-	-

Member	Chain	UniProtKB	GO term
d1hwla1	A	P04035	GO:0004420
d1hwla1	A	P04035	GO:0005789
d1hwla1	A	P04035	GO:0008299
d1hwla1	A	P04035	GO:0015936
d1hwla1	A	P04035	GO:0016616
d1hwla1	A	P04035	GO:0050661
d1hwla1	A	P04035	GO:0004420
d1hwla1	A	P04035	GO:0005789
d1hwla1	A	P04035	GO:0008299
d1hwla1	A	P04035	GO:0015936
d1hwla1	A	P04035	GO:0016616
d1hwla1	A	P04035	GO:0050661

									10										20										30										40										50										60										70										80										90										100										110										120
G	M	T	R	G	P	V	V	R	L	P	R	A	C	D	S	A	E	V	K	A	W	L	E	T	S	E	G	F	A	V	I	K	E	A	F	D	S	T	S	R	-	-	-	-	-	F	A	R	L	Q	K	L	H	T	S	I	A	-	-	-	-	-	G	R	N	L	Y	I	R	F	Q	S	R	S	G	D	A	M	G	M	N	M	I	S	K	G	T	E	K	A	L	S	K	L	H	E	Y	F	P	E	M	Q	I	L	A	V	S	G	N	Y	C	T	D	K	K	P	A	A	I	N	W	I	E	G	R	G
L	M	H	A	Q	V	Q	I	V	G	I	Q	-	-	D	P	L	N	A	R	L	S	L	L	R	-	-	R	K	D	E	I	I	E	L	A	N	R	K	D	Q	L	L	N	S	L	G	G	G	C	R	D	I	E	V	H	T	F	A	D	T	P	R	G	P	M	L	V	A	H	L	I	V	D	V	R	D	A	M	G	A	N	T	V	N	T	M	A	E	A	V	A	P	L	M	E	A	I	T	G	-	G	Q	V	R	L	R	I	L	S	N	-	-	-	-	-	L	A	D	L	-	-	-	-	-	-	-

									10										20										30										40										50										60										70										80										90										100										110										120
G	M	T	R	G	P	V	V	R	L	P	R	A	C	D	S	A	E	V	K	A	W	L	E	T	S	E	G	F	A	V	I	K	E	A	F	D	S	T	S	R	-	-	-	-	-	F	A	R	L	Q	K	L	H	T	S	I	A	-	-	-	-	-	G	R	N	L	Y	I	R	F	Q	S	R	S	G	D	A	M	G	M	N	M	I	S	K	G	T	E	K	A	L	S	K	L	H	E	Y	F	P	E	M	Q	I	L	A	V	S	G	N	Y	C	T	D	K	K	P	A	A	I	N	W	I	E	G	R	G
L	M	H	A	Q	V	Q	I	V	G	I	Q	-	-	D	P	L	N	A	R	L	S	L	L	R	-	-	R	K	D	E	I	I	E	L	A	N	R	K	D	Q	L	L	N	S	L	G	G	G	C	R	D	I	E	V	H	T	F	A	D	T	P	R	G	P	M	L	V	A	H	L	I	V	D	V	R	D	A	M	G	A	N	T	V	N	T	M	A	E	A	V	A	P	L	M	E	A	I	T	G	-	G	Q	V	R	L	R	I	L	S	N	-	-	-	-	-	L	A	D	L	-	-	-	-	-	-	-

									10										20										30										40										50										60										70										80										90										100										110										120
G	M	T	R	G	P	V	V	R	L	P	R	A	C	D	S	A	E	V	K	A	W	L	E	T	S	E	G	F	A	V	I	K	E	A	F	D	S	T	S	R	-	-	-	-	-	F	A	R	L	Q	K	L	H	T	S	I	A	-	-	-	-	-	G	R	N	L	Y	I	R	F	Q	S	R	S	G	D	A	M	G	M	N	M	I	S	K	G	T	E	K	A	L	S	K	L	H	E	Y	F	P	E	M	Q	I	L	A	V	S	G	N	Y	C	T	D	K	K	P	A	A	I	N	W	I	E	G	R	G
L	M	H	A	Q	V	Q	I	V	G	I	Q	-	-	D	P	L	N	A	R	L	S	L	L	R	-	-	R	K	D	E	I	I	E	L	A	N	R	K	D	Q	L	L	N	S	L	G	G	G	C	R	D	I	E	V	H	T	F	A	D	T	P	R	G	P	M	L	V	A	H	L	I	V	D	V	R	D	A	M	G	A	N	T	V	N	T	M	A	E	A	V	A	P	L	M	E	A	I	T	G	-	G	Q	V	R	L	R	I	L	S	N	-	-	-	-	-	L	A	D	L	-	-	-	-	-	-	-