PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

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d1loua-  (   1 )        mrryeVnIVLnPnLdqsqlalEkeiIqraAenygArVekveelglr
d1vmba-  (   6 )        erIYeSmFIIApnvpeeerenlVerVkkiIeerVkGidkvermgmr
d2j5aa1  (   3 )    hyktlryyeTvFAVkptlseeeMkkkFeqvkefIkqkgGeilyeedwgmr
d2qalf1  (   1 )        mrhyeIvFmVhpdqse-qVpgMierytaaitgaeGkihrledwgrr
                         bbbbbbbbb     aaaaaaaaaaaaaaaaa      bbbbbbbb

                             60        70        80        90        100 
d1loua-  (  47 )    rLaypiakdpqGyfLwYQVeMp-edrvndLAreLrirdnVrrVmvvkSq-
d1vmba-  (  53 )    kfayei-kfneGDyTVIyFrCd-GqnlqeLenfYrvtpeIIrwqtfrrfd
d2j5aa1  (  53 )    qLaypiqkfnnARyFlVQFkTenpqLpneLdfqLkidedVIrwlniqike
d2qalf1  (  46 )    qLaypinklhkAhyVLMNVeAp-qevidelettFrfndAVirSmvmrtk-
                    b         bbbbbbbbbbb     aaaaaaaaa    bbbbbbbb   

                             
d1loua-  (  95 )    -epf     
d1vmba-  ( 102 )    lekkeraqr
d2j5aa1  ( 103 )    sevkkn   
d2qalf1  (  94 )    -havteas

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1loua- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1loua- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Ribosomal protein S6	Ribosomal protein S6	Thermus thermophilus [TaxId: 274]	view
d1vmba- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1vmba- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Ribosomal protein S6	Ribosomal protein S6	Thermotoga maritima [TaxId: 2336]	view
d2j5aa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2j5aa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Ribosomal protein S6	Ribosomal protein S6	Aquifex aeolicus [TaxId: 63363]	view
d2qalf1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2qalf1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Ribosomal protein S6	Ribosomal protein S6	Escherichia coli [TaxId: 562]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1loua_	A	P23370	GO:0003735
d1loua_	A	P23370	GO:0005737
d1loua_	A	P23370	GO:0005840
d1loua_	A	P23370	GO:0006412
d1loua_	A	P23370	GO:0019843
d1loua_	A	P23370	GO:0070181
d1loua_	A	P23370	GO:1990904
d1vmba_	A	Q9WZ72	GO:0003735
d1vmba_	A	Q9WZ72	GO:0005737
d1vmba_	A	Q9WZ72	GO:0005840
d1vmba_	A	Q9WZ72	GO:0006412
d1vmba_	A	Q9WZ72	GO:0019843
d1vmba_	A	Q9WZ72	GO:0070181
d1vmba_	A	Q9WZ72	GO:1990904
d2j5aa1	A	O66474	GO:0003735
d2j5aa1	A	O66474	GO:0005737
d2j5aa1	A	O66474	GO:0005840
d2j5aa1	A	O66474	GO:0006412
d2j5aa1	A	O66474	GO:0019843
d2j5aa1	A	O66474	GO:0070181
d2j5aa1	A	O66474	GO:1990904

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