PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1d5ka-  (   1 )     mgdvvaTikVmPespdVdleaLkkeIqeRipegtelhkideepiafgLv
d2b7cb-  (1117 )    paaksiVtLdVkPwddetnleeMVanVkaiemegLtwgahqfipigfgik
                       bbbbbbbbb       aaaaaaaaa       bb    bbb     b

                             60        70        80        90  
d1d5ka-  (  50 )    ALNVmVvvgdaeggteaaeeslsgiegvSnIevtdvrrlm
d2b7cb-  (1167 )    kLqInCvVeddkVslddLqqsIeededhVqsTdiaamqal
                    bbbbbbbb        aaaaaa        bbbbbbbbb

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1d5ka- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1d5ka- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	eEF-1beta-like	Methanobacterium thermoautotrophicum		view
d2b7cb- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2b7cb- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Guanine nucleotide exchange factor (GEF) domain from elongation factor-1 beta	eEF-1beta-like	Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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-	M	G	D	V	V	A	T	I	K	V	M	P	E	S	P	D	V	D	L	E	A	L	K	K	E	I	Q	E	R	I	P	E	G	T	E	L	H	K	I	D	E	E	P	I	A	F	G	L	V	A	L	N	V	M	V	V	V	G	D	A	E	G	G	T	E	A	A	E	E	S	L	S	G	I	E	G	V	S	N	I	E	V	T	D	V	R	R	L	M
P	A	A	K	S	I	V	T	L	D	V	K	P	W	D	D	E	T	N	L	E	E	M	V	A	N	V	K	A	I	E	M	E	G	L	T	W	G	A	H	Q	F	I	P	I	G	F	G	I	K	K	L	Q	I	N	C	V	V	E	D	D	K	V	S	L	D	D	L	Q	Q	S	I	E	E	D	E	D	H	V	Q	S	T	D	I	A	A	M	Q	A	L

Member	Chain	UniProtKB	GO term

									10										20										30										40										50										60										70										80										90
-	M	G	D	V	V	A	T	I	K	V	M	P	E	S	P	D	V	D	L	E	A	L	K	K	E	I	Q	E	R	I	P	E	G	T	E	L	H	K	I	D	E	E	P	I	A	F	G	L	V	A	L	N	V	M	V	V	V	G	D	A	E	G	G	T	E	A	A	E	E	S	L	S	G	I	E	G	V	S	N	I	E	V	T	D	V	R	R	L	M
P	A	A	K	S	I	V	T	L	D	V	K	P	W	D	D	E	T	N	L	E	E	M	V	A	N	V	K	A	I	E	M	E	G	L	T	W	G	A	H	Q	F	I	P	I	G	F	G	I	K	K	L	Q	I	N	C	V	V	E	D	D	K	V	S	L	D	D	L	Q	Q	S	I	E	E	D	E	D	H	V	Q	S	T	D	I	A	A	M	Q	A	L

									10										20										30										40										50										60										70										80										90
-	M	G	D	V	V	A	T	I	K	V	M	P	E	S	P	D	V	D	L	E	A	L	K	K	E	I	Q	E	R	I	P	E	G	T	E	L	H	K	I	D	E	E	P	I	A	F	G	L	V	A	L	N	V	M	V	V	V	G	D	A	E	G	G	T	E	A	A	E	E	S	L	S	G	I	E	G	V	S	N	I	E	V	T	D	V	R	R	L	M
P	A	A	K	S	I	V	T	L	D	V	K	P	W	D	D	E	T	N	L	E	E	M	V	A	N	V	K	A	I	E	M	E	G	L	T	W	G	A	H	Q	F	I	P	I	G	F	G	I	K	K	L	Q	I	N	C	V	V	E	D	D	K	V	S	L	D	D	L	Q	Q	S	I	E	E	D	E	D	H	V	Q	S	T	D	I	A	A	M	Q	A	L

									10										20										30										40										50										60										70										80										90
-	M	G	D	V	V	A	T	I	K	V	M	P	E	S	P	D	V	D	L	E	A	L	K	K	E	I	Q	E	R	I	P	E	G	T	E	L	H	K	I	D	E	E	P	I	A	F	G	L	V	A	L	N	V	M	V	V	V	G	D	A	E	G	G	T	E	A	A	E	E	S	L	S	G	I	E	G	V	S	N	I	E	V	T	D	V	R	R	L	M
P	A	A	K	S	I	V	T	L	D	V	K	P	W	D	D	E	T	N	L	E	E	M	V	A	N	V	K	A	I	E	M	E	G	L	T	W	G	A	H	Q	F	I	P	I	G	F	G	I	K	K	L	Q	I	N	C	V	V	E	D	D	K	V	S	L	D	D	L	Q	Q	S	I	E	E	D	E	D	H	V	Q	S	T	D	I	A	A	M	Q	A	L