PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1kp8a3  ( 137 )     pcsdskaIaqvGtisAn------sdetVGklIaeAMdkVg----kegv-
d1q3qa3  ( 146 )    vdpddeetLlkiAatsItgknAeshkelLAkLAVeAVkqVAekkdgkyvV
                         aaaaaaaaaaa          aaaaaaaaaaaaaa        b 

                             60        70        80        90        100 
d1kp8a3  ( 175 )    ----ItVedGtgl---qdeldvvervaklaggvAvIkVgaatevemkekk
d1q3qa3  ( 196 )    dldnIkfekkagegveeSelv----------kavtIlIrGgtehvIdeVe
                        bbbb          bbb            bbbb     aaaaaaaa

                             110     
d1kp8a3  ( 394 )    arVedAlhaTraaVee 
d1q3qa3  ( 389 )    rALedAVkvVkdvMedg
                    aaaaaaaaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1kp8a3 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1kp8a3 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	GroEL, I domain	GroEL-like chaperone, intermediate domain	Escherichia coli [TaxId: 562]		view
d1q3qa3 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1q3qa3 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Thermosome, I domain	Group II chaperonin (CCT, TRIC), intermediate domain	Thermococcus sp. ks-1, alpha chain [TaxId: 79679]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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V	D	P	D	D	E	E	T	L	L	K	I	A	A	T	S	I	T	G	K	N	A	E	S	H	K	E	L	L	A	K	L	A	V	E	A	V	K	Q	V	A	E	K	K	D	G	K	Y	V	V	D	L	D	N	I	K	F	E	K	K	A	G	E	G	V	E	E	S	E	L	V	-	-	-	-	-	-	-	-	-	-	K	A	V	T	I	L	I	R	G	G	T	E	H	V	I	D	E	V	E	R	A	L	E	D	A	V	K	V	V	K	D	V	M	E	D	G

Member	Chain	UniProtKB	GO term
d1kp8a3	A	P0A6F5	GO:0000287
d1kp8a3	A	P0A6F5	GO:0000287
d1kp8a3	A	P0A6F5	GO:0005515
d1kp8a3	A	P0A6F5	GO:0005515
d1kp8a3	A	P0A6F5	GO:0005524
d1kp8a3	A	P0A6F5	GO:0005524
d1kp8a3	A	P0A6F5	GO:0005737
d1kp8a3	A	P0A6F5	GO:0005737
d1kp8a3	A	P0A6F5	GO:0005829
d1kp8a3	A	P0A6F5	GO:0005829
d1kp8a3	A	P0A6F5	GO:0006457
d1kp8a3	A	P0A6F5	GO:0006457
d1kp8a3	A	P0A6F5	GO:0009314
d1kp8a3	A	P0A6F5	GO:0009314
d1kp8a3	A	P0A6F5	GO:0009408
d1kp8a3	A	P0A6F5	GO:0009408
d1kp8a3	A	P0A6F5	GO:0016020
d1kp8a3	A	P0A6F5	GO:0016020
d1kp8a3	A	P0A6F5	GO:0016853
d1kp8a3	A	P0A6F5	GO:0016853
d1kp8a3	A	P0A6F5	GO:0016887
d1kp8a3	A	P0A6F5	GO:0016887
d1kp8a3	A	P0A6F5	GO:0019068
d1kp8a3	A	P0A6F5	GO:0019068
d1kp8a3	A	P0A6F5	GO:0042026
d1kp8a3	A	P0A6F5	GO:0042026
d1kp8a3	A	P0A6F5	GO:0042802
d1kp8a3	A	P0A6F5	GO:0042802
d1kp8a3	A	P0A6F5	GO:0051082
d1kp8a3	A	P0A6F5	GO:0051082
d1kp8a3	A	P0A6F5	GO:0051085
d1kp8a3	A	P0A6F5	GO:0051085
d1kp8a3	A	P0A6F5	GO:0140662
d1kp8a3	A	P0A6F5	GO:0140662
d1kp8a3	A	P0A6F5	GO:1990220
d1kp8a3	A	P0A6F5	GO:1990220
d1kp8a3	A	P0A6F5	GO:0000287
d1kp8a3	A	P0A6F5	GO:0000287
d1kp8a3	A	P0A6F5	GO:0005515
d1kp8a3	A	P0A6F5	GO:0005515
d1kp8a3	A	P0A6F5	GO:0005524
d1kp8a3	A	P0A6F5	GO:0005524
d1kp8a3	A	P0A6F5	GO:0005737
d1kp8a3	A	P0A6F5	GO:0005737
d1kp8a3	A	P0A6F5	GO:0005829
d1kp8a3	A	P0A6F5	GO:0005829
d1kp8a3	A	P0A6F5	GO:0006457
d1kp8a3	A	P0A6F5	GO:0006457
d1kp8a3	A	P0A6F5	GO:0009314
d1kp8a3	A	P0A6F5	GO:0009314
d1kp8a3	A	P0A6F5	GO:0009408
d1kp8a3	A	P0A6F5	GO:0009408
d1kp8a3	A	P0A6F5	GO:0016020
d1kp8a3	A	P0A6F5	GO:0016020
d1kp8a3	A	P0A6F5	GO:0016853
d1kp8a3	A	P0A6F5	GO:0016853
d1kp8a3	A	P0A6F5	GO:0016887
d1kp8a3	A	P0A6F5	GO:0016887
d1kp8a3	A	P0A6F5	GO:0019068
d1kp8a3	A	P0A6F5	GO:0019068
d1kp8a3	A	P0A6F5	GO:0042026
d1kp8a3	A	P0A6F5	GO:0042026
d1kp8a3	A	P0A6F5	GO:0042802
d1kp8a3	A	P0A6F5	GO:0042802
d1kp8a3	A	P0A6F5	GO:0051082
d1kp8a3	A	P0A6F5	GO:0051082
d1kp8a3	A	P0A6F5	GO:0051085
d1kp8a3	A	P0A6F5	GO:0051085
d1kp8a3	A	P0A6F5	GO:0140662
d1kp8a3	A	P0A6F5	GO:0140662
d1kp8a3	A	P0A6F5	GO:1990220
d1kp8a3	A	P0A6F5	GO:1990220
d1q3qa3	A	P61112	GO:0005524
d1q3qa3	A	P61112	GO:0005524
d1q3qa3	A	P61112	GO:0006457
d1q3qa3	A	P61112	GO:0006457
d1q3qa3	A	P61112	GO:0016887
d1q3qa3	A	P61112	GO:0016887
d1q3qa3	A	P61112	GO:0051082
d1q3qa3	A	P61112	GO:0051082
d1q3qa3	A	P61112	GO:0140662
d1q3qa3	A	P61112	GO:0140662
d1q3qa3	A	P61112	GO:0005524
d1q3qa3	A	P61112	GO:0005524
d1q3qa3	A	P61112	GO:0006457
d1q3qa3	A	P61112	GO:0006457
d1q3qa3	A	P61112	GO:0016887
d1q3qa3	A	P61112	GO:0016887
d1q3qa3	A	P61112	GO:0051082
d1q3qa3	A	P61112	GO:0051082
d1q3qa3	A	P61112	GO:0140662
d1q3qa3	A	P61112	GO:0140662
d1q3qa3	A	P61112	GO:0005524
d1q3qa3	A	P61112	GO:0005524
d1q3qa3	A	P61112	GO:0006457
d1q3qa3	A	P61112	GO:0006457
d1q3qa3	A	P61112	GO:0016887
d1q3qa3	A	P61112	GO:0016887
d1q3qa3	A	P61112	GO:0051082
d1q3qa3	A	P61112	GO:0051082
d1q3qa3	A	P61112	GO:0140662
d1q3qa3	A	P61112	GO:0140662

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V	D	P	D	D	E	E	T	L	L	K	I	A	A	T	S	I	T	G	K	N	A	E	S	H	K	E	L	L	A	K	L	A	V	E	A	V	K	Q	V	A	E	K	K	D	G	K	Y	V	V	D	L	D	N	I	K	F	E	K	K	A	G	E	G	V	E	E	S	E	L	V	-	-	-	-	-	-	-	-	-	-	K	A	V	T	I	L	I	R	G	G	T	E	H	V	I	D	E	V	E	R	A	L	E	D	A	V	K	V	V	K	D	V	M	E	D	G

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V	D	P	D	D	E	E	T	L	L	K	I	A	A	T	S	I	T	G	K	N	A	E	S	H	K	E	L	L	A	K	L	A	V	E	A	V	K	Q	V	A	E	K	K	D	G	K	Y	V	V	D	L	D	N	I	K	F	E	K	K	A	G	E	G	V	E	E	S	E	L	V	-	-	-	-	-	-	-	-	-	-	K	A	V	T	I	L	I	R	G	G	T	E	H	V	I	D	E	V	E	R	A	L	E	D	A	V	K	V	V	K	D	V	M	E	D	G

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V	D	P	D	D	E	E	T	L	L	K	I	A	A	T	S	I	T	G	K	N	A	E	S	H	K	E	L	L	A	K	L	A	V	E	A	V	K	Q	V	A	E	K	K	D	G	K	Y	V	V	D	L	D	N	I	K	F	E	K	K	A	G	E	G	V	E	E	S	E	L	V	-	-	-	-	-	-	-	-	-	-	K	A	V	T	I	L	I	R	G	G	T	E	H	V	I	D	E	V	E	R	A	L	E	D	A	V	K	V	V	K	D	V	M	E	D	G