PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d3proc1  (   6 )    plkfamqrdlgIfptqlpqylqTeklartqaaaIerefgaqfagswiern
d3proc2  (  86 )                      yslqLqsAmeqLdagaa---ldgVqswyvd--
                                          aaaaaaaaaaa        bbbbbbb  

                             60        70        80        90  
d3proc1  (  57 )    edgsfkLVAAtsga----sStlg--------gVevrnvr   
d3proc2  ( 123 )    prsn-aVVVkVddgatdaGvdFvalSgAdsaqVriesspgkl
                         bbbbbb                     bbbbb

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d3proc1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3proc1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Alpha-lytic protease prodomain	Alpha-lytic protease prodomain	Lysobacter enzymogenes [TaxId: 69]		view
d3proc2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3proc2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Alpha-lytic protease prodomain	Alpha-lytic protease prodomain	Lysobacter enzymogenes [TaxId: 69]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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P	L	K	F	A	M	Q	R	D	L	G	I	F	P	T	Q	L	P	Q	Y	L	Q	T	E	K	L	A	R	T	Q	A	A	A	I	E	R	E	F	G	A	Q	F	A	G	S	W	I	E	R	N	E	D	G	S	F	K	L	V	A	A	T	S	G	A	-	-	-	-	S	S	T	L	G	-	-	-	-	-	-	-	-	G	V	E	V	R	N	V	R	-	-	-
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	Y	S	L	Q	L	Q	S	A	M	E	Q	L	D	A	G	A	A	-	-	-	L	D	G	V	Q	S	W	Y	V	D	-	-	P	R	S	N	-	A	V	V	V	K	V	D	D	G	A	T	D	A	G	V	D	F	V	A	L	S	G	A	D	S	A	Q	V	R	I	E	S	S	P	G	K	L

Member	Chain	UniProtKB	GO term
d3proc1	C	P00778	GO:0006508
d3proc1	C	P00778	GO:0005576
d3proc1	C	P00778	GO:0008236
d3proc1	C	P00778	GO:0006508
d3proc1	C	P00778	GO:0005576
d3proc1	C	P00778	GO:0008236
d3proc2	C	P00778	GO:0006508
d3proc2	C	P00778	GO:0005576
d3proc2	C	P00778	GO:0008236
d3proc2	C	P00778	GO:0006508
d3proc2	C	P00778	GO:0005576
d3proc2	C	P00778	GO:0008236

									10										20										30										40										50										60										70										80										90
P	L	K	F	A	M	Q	R	D	L	G	I	F	P	T	Q	L	P	Q	Y	L	Q	T	E	K	L	A	R	T	Q	A	A	A	I	E	R	E	F	G	A	Q	F	A	G	S	W	I	E	R	N	E	D	G	S	F	K	L	V	A	A	T	S	G	A	-	-	-	-	S	S	T	L	G	-	-	-	-	-	-	-	-	G	V	E	V	R	N	V	R	-	-	-
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	Y	S	L	Q	L	Q	S	A	M	E	Q	L	D	A	G	A	A	-	-	-	L	D	G	V	Q	S	W	Y	V	D	-	-	P	R	S	N	-	A	V	V	V	K	V	D	D	G	A	T	D	A	G	V	D	F	V	A	L	S	G	A	D	S	A	Q	V	R	I	E	S	S	P	G	K	L

									10										20										30										40										50										60										70										80										90
P	L	K	F	A	M	Q	R	D	L	G	I	F	P	T	Q	L	P	Q	Y	L	Q	T	E	K	L	A	R	T	Q	A	A	A	I	E	R	E	F	G	A	Q	F	A	G	S	W	I	E	R	N	E	D	G	S	F	K	L	V	A	A	T	S	G	A	-	-	-	-	S	S	T	L	G	-	-	-	-	-	-	-	-	G	V	E	V	R	N	V	R	-	-	-
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	Y	S	L	Q	L	Q	S	A	M	E	Q	L	D	A	G	A	A	-	-	-	L	D	G	V	Q	S	W	Y	V	D	-	-	P	R	S	N	-	A	V	V	V	K	V	D	D	G	A	T	D	A	G	V	D	F	V	A	L	S	G	A	D	S	A	Q	V	R	I	E	S	S	P	G	K	L

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-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	Y	S	L	Q	L	Q	S	A	M	E	Q	L	D	A	G	A	A	-	-	-	L	D	G	V	Q	S	W	Y	V	D	-	-	P	R	S	N	-	A	V	V	V	K	V	D	D	G	A	T	D	A	G	V	D	F	V	A	L	S	G	A	D	S	A	Q	V	R	I	E	S	S	P	G	K	L