PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d4htga2  ( 232 )    nheetrlaisCeraFletldGscrtpiagyAskdeegnCiFrGlvaspdg
d4mlva2  ( 219 )    nhdetaravrAervFlkeMeGgcqVpIagyGrildggnIeLtSlVaspdg
                      aaaaaaaaaaaaaaaa        bbbbbbb     bbbbbbbb    

                             60        70        80        90    
d4htga2  ( 282 )    tkvletsrkgpYvyedMvkmGkdAGqeLls               
d4mlva2  ( 269 )    ktiykehitgk----dpiaIGseAAerLtsqgAkllIdrvkeeld
                      bbbbbbbb      aaaaaaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d4htga2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4htga2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Thale cress (Arabidopsis thaliana) [TaxId: 3702]		view
d4mlva2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4mlva2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Bacillus megaterium [TaxId: 1404]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60										70										80										90
N	H	E	E	T	R	L	A	I	S	C	E	R	A	F	L	E	T	L	D	G	S	C	R	T	P	I	A	G	Y	A	S	K	D	E	E	G	N	C	I	F	R	G	L	V	A	S	P	D	G	T	K	V	L	E	T	S	R	K	G	P	Y	V	Y	E	D	M	V	K	M	G	K	D	A	G	Q	E	L	L	S	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
N	H	D	E	T	A	R	A	V	R	A	E	R	V	F	L	K	E	M	E	G	G	C	Q	V	P	I	A	G	Y	G	R	I	L	D	G	G	N	I	E	L	T	S	L	V	A	S	P	D	G	K	T	I	Y	K	E	H	I	T	G	K	-	-	-	-	D	P	I	A	I	G	S	E	A	A	E	R	L	T	S	Q	G	A	K	L	L	I	D	R	V	K	E	E	L	D

Member	Chain	UniProtKB	GO term

									10										20										30										40										50										60										70										80										90
N	H	E	E	T	R	L	A	I	S	C	E	R	A	F	L	E	T	L	D	G	S	C	R	T	P	I	A	G	Y	A	S	K	D	E	E	G	N	C	I	F	R	G	L	V	A	S	P	D	G	T	K	V	L	E	T	S	R	K	G	P	Y	V	Y	E	D	M	V	K	M	G	K	D	A	G	Q	E	L	L	S	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
N	H	D	E	T	A	R	A	V	R	A	E	R	V	F	L	K	E	M	E	G	G	C	Q	V	P	I	A	G	Y	G	R	I	L	D	G	G	N	I	E	L	T	S	L	V	A	S	P	D	G	K	T	I	Y	K	E	H	I	T	G	K	-	-	-	-	D	P	I	A	I	G	S	E	A	A	E	R	L	T	S	Q	G	A	K	L	L	I	D	R	V	K	E	E	L	D

									10										20										30										40										50										60										70										80										90
N	H	E	E	T	R	L	A	I	S	C	E	R	A	F	L	E	T	L	D	G	S	C	R	T	P	I	A	G	Y	A	S	K	D	E	E	G	N	C	I	F	R	G	L	V	A	S	P	D	G	T	K	V	L	E	T	S	R	K	G	P	Y	V	Y	E	D	M	V	K	M	G	K	D	A	G	Q	E	L	L	S	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
N	H	D	E	T	A	R	A	V	R	A	E	R	V	F	L	K	E	M	E	G	G	C	Q	V	P	I	A	G	Y	G	R	I	L	D	G	G	N	I	E	L	T	S	L	V	A	S	P	D	G	K	T	I	Y	K	E	H	I	T	G	K	-	-	-	-	D	P	I	A	I	G	S	E	A	A	E	R	L	T	S	Q	G	A	K	L	L	I	D	R	V	K	E	E	L	D

									10										20										30										40										50										60										70										80										90
N	H	E	E	T	R	L	A	I	S	C	E	R	A	F	L	E	T	L	D	G	S	C	R	T	P	I	A	G	Y	A	S	K	D	E	E	G	N	C	I	F	R	G	L	V	A	S	P	D	G	T	K	V	L	E	T	S	R	K	G	P	Y	V	Y	E	D	M	V	K	M	G	K	D	A	G	Q	E	L	L	S	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
N	H	D	E	T	A	R	A	V	R	A	E	R	V	F	L	K	E	M	E	G	G	C	Q	V	P	I	A	G	Y	G	R	I	L	D	G	G	N	I	E	L	T	S	L	V	A	S	P	D	G	K	T	I	Y	K	E	H	I	T	G	K	-	-	-	-	D	P	I	A	I	G	S	E	A	A	E	R	L	T	S	Q	G	A	K	L	L	I	D	R	V	K	E	E	L	D