PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1914a1  (4004 )      fqtweeFsraAeklYladpm--kVrVvlkyrhvdg-----nlcIkVTd
d1914a2  (2001 )    mvlleseqFlteLtrLfqkCrssgsVfitlkkydeglepaenkclLrAtD
d2w9ja-  (   1 )    m-llsneeFlkkLtdllqt------vlsqknpvd-------asvlIrAks
                         aaaaaaaaaaaaa         bbbbbb         bbbbbbb 

                             60        70        80       
d1914a1  (4045 )    dlv-clvyrtdqaqdvkkIekfhsqLmrlmvakesrnv
d1914a2  (2063 )    gkr-kISTvVs-skevnkFqmaysnllranmdglkk-r
d2w9ja-  (  53 )    gaaekisTvVe-ldyftdFfqsyaevkgqiv       
                        bbbbbb     aaaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1914a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1914a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Signal recognition particle 9KDa protein, SRP9	Signal recognition particle alu RNA binding heterodimer, SRP9/14	Mouse (Mus musculus) [TaxId: 10090]	view
d1914a2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1914a2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Signal recognition particle 14KDa protein, SRP14	Signal recognition particle alu RNA binding heterodimer, SRP9/14	Mouse (Mus musculus) [TaxId: 10090]	view
d2w9ja- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2w9ja- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1914a1	A	P16254	GO:0003723
d1914a1	A	P16254	GO:0005634
d1914a1	A	P16254	GO:0005737
d1914a1	A	P16254	GO:0005786
d1914a1	A	P16254	GO:0006614
d1914a1	A	P16254	GO:0008312
d1914a1	A	P16254	GO:0030942
d1914a1	A	P16254	GO:0045047
d1914a1	A	P16254	GO:0048500
d1914a1	A	P16254	GO:0003723
d1914a1	A	P16254	GO:0005634
d1914a1	A	P16254	GO:0005737
d1914a1	A	P16254	GO:0005786
d1914a1	A	P16254	GO:0006614
d1914a1	A	P16254	GO:0008312
d1914a1	A	P16254	GO:0030942
d1914a1	A	P16254	GO:0045047
d1914a1	A	P16254	GO:0048500
d1914a2	A	P16254	GO:0003723
d1914a2	A	P16254	GO:0005634
d1914a2	A	P16254	GO:0005737
d1914a2	A	P16254	GO:0005786
d1914a2	A	P16254	GO:0006614
d1914a2	A	P16254	GO:0008312
d1914a2	A	P16254	GO:0030942
d1914a2	A	P16254	GO:0045047
d1914a2	A	P16254	GO:0048500
d1914a2	A	P16254	GO:0003723
d1914a2	A	P16254	GO:0005634
d1914a2	A	P16254	GO:0005737
d1914a2	A	P16254	GO:0005786
d1914a2	A	P16254	GO:0006614
d1914a2	A	P16254	GO:0008312
d1914a2	A	P16254	GO:0030942
d1914a2	A	P16254	GO:0045047
d1914a2	A	P16254	GO:0048500

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