PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1u94a2  ( 269 )    nfygeLVdlGvkeklIekagawysykgekIgqgkanAtawLkdnpetAke
d1xp8a2  ( 283 )     qlsdlVglAadmdiIkkagsfysygderIgqgkekTiayIaerpemeqe
                      aaaaaaaaaa    b     bb    bbb  aaaaaaaa   aaaaaa

                             60  
d1u94a2  ( 319 )    Iekkvrelll
d1xp8a2  ( 332 )    Irdrvmaair
                    aaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1u94a2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1u94a2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	RecA protein, C-terminal domain	RecA protein, C-terminal domain	Escherichia coli [TaxId: 562]		view
d1xp8a2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1xp8a2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	RecA protein, C-terminal domain	RecA protein, C-terminal domain	Deinococcus radiodurans [TaxId: 1299]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60
N	F	Y	G	E	L	V	D	L	G	V	K	E	K	L	I	E	K	A	G	A	W	Y	S	Y	K	G	E	K	I	G	Q	G	K	A	N	A	T	A	W	L	K	D	N	P	E	T	A	K	E	I	E	K	K	V	R	E	L	L	L
-	Q	L	S	D	L	V	G	L	A	A	D	M	D	I	I	K	K	A	G	S	F	Y	S	Y	G	D	E	R	I	G	Q	G	K	E	K	T	I	A	Y	I	A	E	R	P	E	M	E	Q	E	I	R	D	R	V	M	A	A	I	R

Member	Chain	UniProtKB	GO term
d1u94a2	A	P0A7G6	GO:0000725
d1u94a2	A	P0A7G6	GO:0003677
d1u94a2	A	P0A7G6	GO:0003684
d1u94a2	A	P0A7G6	GO:0003697
d1u94a2	A	P0A7G6	GO:0005515
d1u94a2	A	P0A7G6	GO:0005524
d1u94a2	A	P0A7G6	GO:0005737
d1u94a2	A	P0A7G6	GO:0006259
d1u94a2	A	P0A7G6	GO:0006281
d1u94a2	A	P0A7G6	GO:0006310
d1u94a2	A	P0A7G6	GO:0006974
d1u94a2	A	P0A7G6	GO:0008094
d1u94a2	A	P0A7G6	GO:0009355
d1u94a2	A	P0A7G6	GO:0009432
d1u94a2	A	P0A7G6	GO:0010212
d1u94a2	A	P0A7G6	GO:0016887
d1u94a2	A	P0A7G6	GO:0019985
d1u94a2	A	P0A7G6	GO:0035825
d1u94a2	A	P0A7G6	GO:0048870
d1u94a2	A	P0A7G6	GO:0140297
d1u94a2	A	P0A7G6	GO:0140664
d1xp8a2	A	P42443	GO:0003677
d1xp8a2	A	P42443	GO:0003684
d1xp8a2	A	P42443	GO:0003697
d1xp8a2	A	P42443	GO:0005524
d1xp8a2	A	P42443	GO:0005737
d1xp8a2	A	P42443	GO:0006259
d1xp8a2	A	P42443	GO:0006281
d1xp8a2	A	P42443	GO:0006302
d1xp8a2	A	P42443	GO:0006310
d1xp8a2	A	P42443	GO:0008094
d1xp8a2	A	P42443	GO:0009432
d1xp8a2	A	P42443	GO:0016887
d1xp8a2	A	P42443	GO:0140664

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N	F	Y	G	E	L	V	D	L	G	V	K	E	K	L	I	E	K	A	G	A	W	Y	S	Y	K	G	E	K	I	G	Q	G	K	A	N	A	T	A	W	L	K	D	N	P	E	T	A	K	E	I	E	K	K	V	R	E	L	L	L
-	Q	L	S	D	L	V	G	L	A	A	D	M	D	I	I	K	K	A	G	S	F	Y	S	Y	G	D	E	R	I	G	Q	G	K	E	K	T	I	A	Y	I	A	E	R	P	E	M	E	Q	E	I	R	D	R	V	M	A	A	I	R

									10										20										30										40										50										60
N	F	Y	G	E	L	V	D	L	G	V	K	E	K	L	I	E	K	A	G	A	W	Y	S	Y	K	G	E	K	I	G	Q	G	K	A	N	A	T	A	W	L	K	D	N	P	E	T	A	K	E	I	E	K	K	V	R	E	L	L	L
-	Q	L	S	D	L	V	G	L	A	A	D	M	D	I	I	K	K	A	G	S	F	Y	S	Y	G	D	E	R	I	G	Q	G	K	E	K	T	I	A	Y	I	A	E	R	P	E	M	E	Q	E	I	R	D	R	V	M	A	A	I	R

									10										20										30										40										50										60
N	F	Y	G	E	L	V	D	L	G	V	K	E	K	L	I	E	K	A	G	A	W	Y	S	Y	K	G	E	K	I	G	Q	G	K	A	N	A	T	A	W	L	K	D	N	P	E	T	A	K	E	I	E	K	K	V	R	E	L	L	L
-	Q	L	S	D	L	V	G	L	A	A	D	M	D	I	I	K	K	A	G	S	F	Y	S	Y	G	D	E	R	I	G	Q	G	K	E	K	T	I	A	Y	I	A	E	R	P	E	M	E	Q	E	I	R	D	R	V	M	A	A	I	R