PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1fm0e-  (   2 )      a--etkivVgpqpfsvgeeypwLaerdeDgavvtftgkVr--------
d2omda-  (   1 )    mevgmIprvyLghewFgaerIlseyqvpedCgaqvlflgiPrna-pedgg
d2q5we1  (   2 )         mkqfeIviepIqteqYre-fTineyQgavvvftghVrewtk--gv
d2wp4a-  (  10 )         ypyCrLtdqpLsvdeVla-aVsgpeQggivifvgnvrd-------
d5mpoc-  (  40 )    ees--kdvInFtae-LsvdeVs--lViSplCgaislfvgtTrnn-fe---
d6jc0b-  (   2 )      sAeivrVeLtedpIslteYea-lVa---agavvGfagvVrdhdg--gr
                            bbbb     aaaaaa         bbbbbbbb          

                             60        70        80        90        100 
d1fm0e-  (  47 )    -vnaltLehypgmTekaLaeIVdeArnrw-pLGrVTVIhrigeLwpgdeI
d2omda-  (  50 )    nIeaLeyeAypemAikeMekIrqeTiekf-gVkeVFIHhrlglVkigepS
d2q5we1  (  44 )    kTeyLeyeAyipmAekkLaqIGdeInekwpgT-iTSIVhrigpLqisdia
d2wp4a-  (  54 )    --trlfyeAyppmVirtLmsIIgrCedkaegV-rVAVAHrtgeLqigdaa
d5mpoc-  (  84 )    gVisleyeAylpmAeneVrkICsdIrqkw-pVkHIAVFHrlglVpvseaS
d6jc0b-  (  47 )    sVlrLeysah-ptAqrtLeeVAeeIaaqsdgVraIAVShrigpLkigdaa
                        bbbbb   aaaaaaaaaaaaaaaa     bbbbbbb bbb    bb

                             110       120       130       140       150 
d1fm0e-  (  95 )    VFVGVTSahrssAfeAgqFImdYLktrApFwkreatpegdrwvearesdq
d2omda-  (  99 )    FLVLAVGghreeTfkACryAvdeTkkrVpIwkkeifk             
d2q5we1  (  93 )    vLIAVSSphrkdAyrANeyAierIkeiVpIwkkEiwe-dgskwqgh    
d2wp4a-  ( 101 )    VVIGASAphraeAfdAArmCielLkqeVpiwkess               
d5mpoc-  ( 135 )    IIIAVSSahraaSleAvsyAidtlkakVpIwkeiye              
d6jc0b-  (  96 )    LVAAVAAdhrraAfetCarLvdvVkerLpvwkhQhFadgtdewvns    
                    bbbbbbb  aaaaaaaaaaaaaaaaaa  bb                   

                          
d1fm0e-  ( 145 )    qaakrw
d2omda-                   
d2q5we1                   
d2wp4a-                   
d5mpoc-                   
d6jc0b-

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1fm0e- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1fm0e- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Molybdopterin synthase subunit MoaE	Molybdopterin synthase subunit MoaE	Escherichia coli [TaxId: 562]	view
d2omda- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2omda- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Aquifex aeolicus [TaxId: 224324]	view
d2q5we1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2q5we1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Staphylococcus aureus [TaxId: 1280]	view
d2wp4a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2wp4a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Mycobacterium tuberculosis [TaxId: 1773]	view
d5mpoc- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d5mpoc- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Human (Homo sapiens) [TaxId: 9606]	view
d6jc0b- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d6jc0b- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Mycobacterium smegmatis [TaxId: 246196]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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M	E	V	G	M	I	P	R	V	Y	L	G	H	E	W	F	G	A	E	R	I	L	S	E	Y	Q	V	P	E	D	C	G	A	Q	V	L	F	L	G	I	P	R	N	A	-	P	E	D	G	G	N	I	E	A	L	E	Y	E	A	Y	P	E	M	A	I	K	E	M	E	K	I	R	Q	E	T	I	E	K	F	-	G	V	K	E	V	F	I	H	H	R	L	G	L	V	K	I	G	E	P	S	F	L	V	L	A	V	G	G	H	R	E	E	T	F	K	A	C	R	Y	A	V	D	E	T	K	K	R	V	P	I	W	K	K	E	I	F	K	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
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E	E	S	-	-	K	D	V	I	N	F	T	A	E	-	L	S	V	D	E	V	S	-	-	L	V	I	S	P	L	C	G	A	I	S	L	F	V	G	T	T	R	N	N	-	F	E	-	-	-	G	V	I	S	L	E	Y	E	A	Y	L	P	M	A	E	N	E	V	R	K	I	C	S	D	I	R	Q	K	W	-	P	V	K	H	I	A	V	F	H	R	L	G	L	V	P	V	S	E	A	S	I	I	I	A	V	S	S	A	H	R	A	A	S	L	E	A	V	S	Y	A	I	D	T	L	K	A	K	V	P	I	W	K	E	I	Y	E	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
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Member	Chain	UniProtKB	GO term
d1fm0e_	E	P30748	GO:0005515
d1fm0e_	E	P30748	GO:0005829
d1fm0e_	E	P30748	GO:0006777
d1fm0e_	E	P30748	GO:1990140
d1fm0e_	E	P30748	GO:0016740
d1fm0e_	E	P30748	GO:0030366
d1fm0e_	E	P30748	GO:0032324
d1fm0e_	E	P30748	GO:0042803
d1fm0e_	E	P30749	GO:0005515
d1fm0e_	E	P30749	GO:0005829
d1fm0e_	E	P30749	GO:0006777
d1fm0e_	E	P30749	GO:1990140
d1fm0e_	E	P30749	GO:0016740
d1fm0e_	E	P30749	GO:0030366
d1fm0e_	E	P30749	GO:0032324
d1fm0e_	E	P30749	GO:0042803
d1fm0e_	E	P30748	GO:0005515
d1fm0e_	E	P30748	GO:0005829
d1fm0e_	E	P30748	GO:0006777
d1fm0e_	E	P30748	GO:1990140
d1fm0e_	E	P30748	GO:0016740
d1fm0e_	E	P30748	GO:0030366
d1fm0e_	E	P30748	GO:0032324
d1fm0e_	E	P30748	GO:0042803
d1fm0e_	E	P30749	GO:0005515
d1fm0e_	E	P30749	GO:0005829
d1fm0e_	E	P30749	GO:0006777
d1fm0e_	E	P30749	GO:1990140
d1fm0e_	E	P30749	GO:0016740
d1fm0e_	E	P30749	GO:0030366
d1fm0e_	E	P30749	GO:0032324
d1fm0e_	E	P30749	GO:0042803
d1fm0e_	E	P30748	GO:0005515
d1fm0e_	E	P30748	GO:0005829
d1fm0e_	E	P30748	GO:0006777
d1fm0e_	E	P30748	GO:1990140
d1fm0e_	E	P30748	GO:0016740
d1fm0e_	E	P30748	GO:0030366
d1fm0e_	E	P30748	GO:0032324
d1fm0e_	E	P30748	GO:0042803
d1fm0e_	E	P30749	GO:0005515
d1fm0e_	E	P30749	GO:0005829
d1fm0e_	E	P30749	GO:0006777
d1fm0e_	E	P30749	GO:1990140
d1fm0e_	E	P30749	GO:0016740
d1fm0e_	E	P30749	GO:0030366
d1fm0e_	E	P30749	GO:0032324
d1fm0e_	E	P30749	GO:0042803

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M	E	V	G	M	I	P	R	V	Y	L	G	H	E	W	F	G	A	E	R	I	L	S	E	Y	Q	V	P	E	D	C	G	A	Q	V	L	F	L	G	I	P	R	N	A	-	P	E	D	G	G	N	I	E	A	L	E	Y	E	A	Y	P	E	M	A	I	K	E	M	E	K	I	R	Q	E	T	I	E	K	F	-	G	V	K	E	V	F	I	H	H	R	L	G	L	V	K	I	G	E	P	S	F	L	V	L	A	V	G	G	H	R	E	E	T	F	K	A	C	R	Y	A	V	D	E	T	K	K	R	V	P	I	W	K	K	E	I	F	K	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
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-	-	S	A	E	I	V	R	V	E	L	T	E	D	P	I	S	L	T	E	Y	E	A	-	L	V	A	-	-	-	A	G	A	V	V	G	F	A	G	V	V	R	D	H	D	G	-	-	G	R	S	V	L	R	L	E	Y	S	A	H	-	P	T	A	Q	R	T	L	E	E	V	A	E	E	I	A	A	Q	S	D	G	V	R	A	I	A	V	S	H	R	I	G	P	L	K	I	G	D	A	A	L	V	A	A	V	A	A	D	H	R	R	A	A	F	E	T	C	A	R	L	V	D	V	V	K	E	R	L	P	V	W	K	H	Q	H	F	A	D	G	T	D	E	W	V	N	S	-	-	-	-	-	-	-	-	-	-

									10										20										30										40										50										60										70										80										90										100										110										120										130										140										150
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E	E	S	-	-	K	D	V	I	N	F	T	A	E	-	L	S	V	D	E	V	S	-	-	L	V	I	S	P	L	C	G	A	I	S	L	F	V	G	T	T	R	N	N	-	F	E	-	-	-	G	V	I	S	L	E	Y	E	A	Y	L	P	M	A	E	N	E	V	R	K	I	C	S	D	I	R	Q	K	W	-	P	V	K	H	I	A	V	F	H	R	L	G	L	V	P	V	S	E	A	S	I	I	I	A	V	S	S	A	H	R	A	A	S	L	E	A	V	S	Y	A	I	D	T	L	K	A	K	V	P	I	W	K	E	I	Y	E	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
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									10										20										30										40										50										60										70										80										90										100										110										120										130										140										150
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E	E	S	-	-	K	D	V	I	N	F	T	A	E	-	L	S	V	D	E	V	S	-	-	L	V	I	S	P	L	C	G	A	I	S	L	F	V	G	T	T	R	N	N	-	F	E	-	-	-	G	V	I	S	L	E	Y	E	A	Y	L	P	M	A	E	N	E	V	R	K	I	C	S	D	I	R	Q	K	W	-	P	V	K	H	I	A	V	F	H	R	L	G	L	V	P	V	S	E	A	S	I	I	I	A	V	S	S	A	H	R	A	A	S	L	E	A	V	S	Y	A	I	D	T	L	K	A	K	V	P	I	W	K	E	I	Y	E	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
-	-	S	A	E	I	V	R	V	E	L	T	E	D	P	I	S	L	T	E	Y	E	A	-	L	V	A	-	-	-	A	G	A	V	V	G	F	A	G	V	V	R	D	H	D	G	-	-	G	R	S	V	L	R	L	E	Y	S	A	H	-	P	T	A	Q	R	T	L	E	E	V	A	E	E	I	A	A	Q	S	D	G	V	R	A	I	A	V	S	H	R	I	G	P	L	K	I	G	D	A	A	L	V	A	A	V	A	A	D	H	R	R	A	A	F	E	T	C	A	R	L	V	D	V	V	K	E	R	L	P	V	W	K	H	Q	H	F	A	D	G	T	D	E	W	V	N	S	-	-	-	-	-	-	-	-	-	-