PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1uoua3  ( 374 )    rAreqeellApadGTVelVralplalVlhelga--------lrlgVgAel
d3h5qa3  ( 331 )    qAqyqieykAkksgyVtelvsndigvAs--LgagrltkeddidlaVgIvl
d4eada3  ( 336 )    tAmltkaVyadtegfVsemdtralgmAvvaMgggrrqasdtidysVgFtd
                       bbbbb     bbbbbb aaaaaaa                   bbb 

                             60        70        80        90        100 
d1uoua3  ( 424 )    lVdvGqrL-rgtpWLrVhRdgpaLsgpqsraLqeALvlsdrapfaaplpf
d3h5qa3  ( 381 )    nkkiGdkVeegesLLtIhSnrqd-vddvvkkLdsSItIad--hvvsptli
d4eada3  ( 386 )    mArlgdqVdgqrpLAvIhAkdennwqeAakaVkaAIklad-kapestptv
                          bb      bbbbb      aaaaaaaaaabbbb           

                           
d1uoua3  ( 474 )    aelvlpp
d3h5qa3  ( 428 )    hkiite 
d4eada3  ( 435 )    yrrise

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1uoua3 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1uoua3 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Thymidine phosphorylase	Pyrimidine nucleoside phosphorylase C-terminal domain	Human (Homo sapiens) [TaxId: 9606]	view
d3h5qa3 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3h5qa3 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Staphylococcus aureus [TaxId: 93062]	view
d4eada3 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4eada3 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Thymidine phosphorylase	Pyrimidine nucleoside phosphorylase C-terminal domain	Escherichia coli [TaxId: 562]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60										70										80										90										100
R	A	R	E	Q	E	E	L	L	A	P	A	D	G	T	V	E	L	V	R	A	L	P	L	A	L	V	L	H	E	L	G	A	-	-	-	-	-	-	-	-	L	R	L	G	V	G	A	E	L	L	V	D	V	G	Q	R	L	-	R	G	T	P	W	L	R	V	H	R	D	G	P	A	L	S	G	P	Q	S	R	A	L	Q	E	A	L	V	L	S	D	R	A	P	F	A	A	P	L	P	F	A	E	L	V	L	P	P
Q	A	Q	Y	Q	I	E	Y	K	A	K	K	S	G	Y	V	T	E	L	V	S	N	D	I	G	V	A	S	-	-	L	G	A	G	R	L	T	K	E	D	D	I	D	L	A	V	G	I	V	L	N	K	K	I	G	D	K	V	E	E	G	E	S	L	L	T	I	H	S	N	R	Q	D	-	V	D	D	V	V	K	K	L	D	S	S	I	T	I	A	D	-	-	H	V	V	S	P	T	L	I	H	K	I	I	T	E	-
T	A	M	L	T	K	A	V	Y	A	D	T	E	G	F	V	S	E	M	D	T	R	A	L	G	M	A	V	V	A	M	G	G	G	R	R	Q	A	S	D	T	I	D	Y	S	V	G	F	T	D	M	A	R	L	G	D	Q	V	D	G	Q	R	P	L	A	V	I	H	A	K	D	E	N	N	W	Q	E	A	A	K	A	V	K	A	A	I	K	L	A	D	-	K	A	P	E	S	T	P	T	V	Y	R	R	I	S	E	-

Member	Chain	UniProtKB	GO term
d1uoua3	A	P19971	GO:0000002
d1uoua3	A	P19971	GO:0001525
d1uoua3	A	P19971	GO:0004645
d1uoua3	A	P19971	GO:0005515
d1uoua3	A	P19971	GO:0005829
d1uoua3	A	P19971	GO:0006206
d1uoua3	A	P19971	GO:0006213
d1uoua3	A	P19971	GO:0006935
d1uoua3	A	P19971	GO:0007165
d1uoua3	A	P19971	GO:0008083
d1uoua3	A	P19971	GO:0009032
d1uoua3	A	P19971	GO:0016154
d1uoua3	A	P19971	GO:0016757
d1uoua3	A	P19971	GO:0016763
d1uoua3	A	P19971	GO:0030154
d1uoua3	A	P19971	GO:0031641
d1uoua3	A	P19971	GO:0042803
d1uoua3	A	P19971	GO:0046074
d1uoua3	A	P19971	GO:0051969
d1uoua3	A	P19971	GO:1905333
d1uoua3	A	P19971	GO:0000002
d1uoua3	A	P19971	GO:0001525
d1uoua3	A	P19971	GO:0004645
d1uoua3	A	P19971	GO:0005515
d1uoua3	A	P19971	GO:0005829
d1uoua3	A	P19971	GO:0006206
d1uoua3	A	P19971	GO:0006213
d1uoua3	A	P19971	GO:0006935
d1uoua3	A	P19971	GO:0007165
d1uoua3	A	P19971	GO:0008083
d1uoua3	A	P19971	GO:0009032
d1uoua3	A	P19971	GO:0016154
d1uoua3	A	P19971	GO:0016757
d1uoua3	A	P19971	GO:0016763
d1uoua3	A	P19971	GO:0030154
d1uoua3	A	P19971	GO:0031641
d1uoua3	A	P19971	GO:0042803
d1uoua3	A	P19971	GO:0046074
d1uoua3	A	P19971	GO:0051969
d1uoua3	A	P19971	GO:1905333

									10										20										30										40										50										60										70										80										90										100
R	A	R	E	Q	E	E	L	L	A	P	A	D	G	T	V	E	L	V	R	A	L	P	L	A	L	V	L	H	E	L	G	A	-	-	-	-	-	-	-	-	L	R	L	G	V	G	A	E	L	L	V	D	V	G	Q	R	L	-	R	G	T	P	W	L	R	V	H	R	D	G	P	A	L	S	G	P	Q	S	R	A	L	Q	E	A	L	V	L	S	D	R	A	P	F	A	A	P	L	P	F	A	E	L	V	L	P	P
Q	A	Q	Y	Q	I	E	Y	K	A	K	K	S	G	Y	V	T	E	L	V	S	N	D	I	G	V	A	S	-	-	L	G	A	G	R	L	T	K	E	D	D	I	D	L	A	V	G	I	V	L	N	K	K	I	G	D	K	V	E	E	G	E	S	L	L	T	I	H	S	N	R	Q	D	-	V	D	D	V	V	K	K	L	D	S	S	I	T	I	A	D	-	-	H	V	V	S	P	T	L	I	H	K	I	I	T	E	-
T	A	M	L	T	K	A	V	Y	A	D	T	E	G	F	V	S	E	M	D	T	R	A	L	G	M	A	V	V	A	M	G	G	G	R	R	Q	A	S	D	T	I	D	Y	S	V	G	F	T	D	M	A	R	L	G	D	Q	V	D	G	Q	R	P	L	A	V	I	H	A	K	D	E	N	N	W	Q	E	A	A	K	A	V	K	A	A	I	K	L	A	D	-	K	A	P	E	S	T	P	T	V	Y	R	R	I	S	E	-

									10										20										30										40										50										60										70										80										90										100
R	A	R	E	Q	E	E	L	L	A	P	A	D	G	T	V	E	L	V	R	A	L	P	L	A	L	V	L	H	E	L	G	A	-	-	-	-	-	-	-	-	L	R	L	G	V	G	A	E	L	L	V	D	V	G	Q	R	L	-	R	G	T	P	W	L	R	V	H	R	D	G	P	A	L	S	G	P	Q	S	R	A	L	Q	E	A	L	V	L	S	D	R	A	P	F	A	A	P	L	P	F	A	E	L	V	L	P	P
Q	A	Q	Y	Q	I	E	Y	K	A	K	K	S	G	Y	V	T	E	L	V	S	N	D	I	G	V	A	S	-	-	L	G	A	G	R	L	T	K	E	D	D	I	D	L	A	V	G	I	V	L	N	K	K	I	G	D	K	V	E	E	G	E	S	L	L	T	I	H	S	N	R	Q	D	-	V	D	D	V	V	K	K	L	D	S	S	I	T	I	A	D	-	-	H	V	V	S	P	T	L	I	H	K	I	I	T	E	-
T	A	M	L	T	K	A	V	Y	A	D	T	E	G	F	V	S	E	M	D	T	R	A	L	G	M	A	V	V	A	M	G	G	G	R	R	Q	A	S	D	T	I	D	Y	S	V	G	F	T	D	M	A	R	L	G	D	Q	V	D	G	Q	R	P	L	A	V	I	H	A	K	D	E	N	N	W	Q	E	A	A	K	A	V	K	A	A	I	K	L	A	D	-	K	A	P	E	S	T	P	T	V	Y	R	R	I	S	E	-

									10										20										30										40										50										60										70										80										90										100
R	A	R	E	Q	E	E	L	L	A	P	A	D	G	T	V	E	L	V	R	A	L	P	L	A	L	V	L	H	E	L	G	A	-	-	-	-	-	-	-	-	L	R	L	G	V	G	A	E	L	L	V	D	V	G	Q	R	L	-	R	G	T	P	W	L	R	V	H	R	D	G	P	A	L	S	G	P	Q	S	R	A	L	Q	E	A	L	V	L	S	D	R	A	P	F	A	A	P	L	P	F	A	E	L	V	L	P	P
Q	A	Q	Y	Q	I	E	Y	K	A	K	K	S	G	Y	V	T	E	L	V	S	N	D	I	G	V	A	S	-	-	L	G	A	G	R	L	T	K	E	D	D	I	D	L	A	V	G	I	V	L	N	K	K	I	G	D	K	V	E	E	G	E	S	L	L	T	I	H	S	N	R	Q	D	-	V	D	D	V	V	K	K	L	D	S	S	I	T	I	A	D	-	-	H	V	V	S	P	T	L	I	H	K	I	I	T	E	-
T	A	M	L	T	K	A	V	Y	A	D	T	E	G	F	V	S	E	M	D	T	R	A	L	G	M	A	V	V	A	M	G	G	G	R	R	Q	A	S	D	T	I	D	Y	S	V	G	F	T	D	M	A	R	L	G	D	Q	V	D	G	Q	R	P	L	A	V	I	H	A	K	D	E	N	N	W	Q	E	A	A	K	A	V	K	A	A	I	K	L	A	D	-	K	A	P	E	S	T	P	T	V	Y	R	R	I	S	E	-