PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1dk0a-  (   2 )    aFsVnydssfggysIhdYLgqWastFgdVnhtngnvtdan-sggFyggsl
d4jera-  (   2 )    sttIqYnsnyadysIssYLreWAnnFgdIdqAp---aetkdrGsfsgssf
                      bbbb 333    aaaaaaaaaaaa           33    bbb    

                             60        70        80        90        100 
d1dk0a-  (  51 )    sgsqYAIsStanqvTAFVAggnLtytlfnepahTlygqLdsLsFGdglsg
d4jera-  (  51 )    sGtqYAIgSShsnpeGMIAegdLkysfm--pqhTFhgqIdtLqFGkdlat
                    bbbbbbbb      bbbbbbbbbbb         bbbbbbbbbbbb bb 

                             110       120       130       140       150 
d1dk0a-  ( 101 )    Gd---tspysIqvpdVsFggLnlsSl-----qaqghdGvVhqVVygLmsG
d4jera-  (  99 )    naggpsagkhLe-idItFneLdLsgefdsgsmtenhqgdMHkSVrgLMkg
                             bb    bbbb   bbb             aaaaaaaaaa  

                             160       170       180       190 
d1dk0a-  ( 143 )    dTgaLetaLngiLddyglsvnstFdqVaaaTa        
d4jera-  ( 150 )    npdpMleVMkak----ginVdtaFkdL-siAsqypdsgym
                      aaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1dk0a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1dk0a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Heme-binding protein A (HasA)	Heme-binding protein A (HasA)	Serratia marcescens [TaxId: 615]		view
d4jera- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4jera- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Yersinia pestis [TaxId: 632]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1dk0a_	A	Q54450	GO:0005515
d1dk0a_	A	Q54450	GO:0005576
d1dk0a_	A	Q54450	GO:0046872

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