PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1fx3a-  (  16 )    pvlqiqriyvkdvsfeapnlphifqw-plgfdlstettqvgd------dl
d2hnga1  (   6 )     nlkreqefvsqyhfdarnfewenengapetkvdvnfqllqhdqenqvTs
                      bbb   bbbbbbbb   aaaa          bbbbbbbb        b

                             60        70        80        90        100 
d1fx3a-  (  63 )    yeVVLnIsVeTtedsgdvAFiCeVkQAGvFtIsgle---dvqmahCltSq
d2hnga1  (  55 )    LiViLsFivfd-------kFvIsGtIsQvNhidgriVnepseLnqeevet
                    bbbbbbbbb           bbbbbbbbbbbbb           aaaa a

                             110       120       130       140   
d1fx3a-  ( 111 )    CPnmLFpyArelVsnlVnrg-tFpalnLspvnFdalfveymnqae
d2hnga1  (  99 )    LArpCln-LnrlTyevTeialdlpGinlef               
                    aaaaaa   aaaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1fx3a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1fx3a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Bacterial protein-export protein SecB	Bacterial protein-export protein SecB	Haemophilus influenzae [TaxId: 727]		view
d2hnga1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2hnga1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein SP1558	SP1558-like	Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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P	V	L	Q	I	Q	R	I	Y	V	K	D	V	S	F	E	A	P	N	L	P	H	I	F	Q	W	-	P	L	G	F	D	L	S	T	E	T	T	Q	V	G	D	-	-	-	-	-	-	D	L	Y	E	V	V	L	N	I	S	V	E	T	T	E	D	S	G	D	V	A	F	I	C	E	V	K	Q	A	G	V	F	T	I	S	G	L	E	-	-	-	D	V	Q	M	A	H	C	L	T	S	Q	C	P	N	M	L	F	P	Y	A	R	E	L	V	S	N	L	V	N	R	G	-	T	F	P	A	L	N	L	S	P	V	N	F	D	A	L	F	V	E	Y	M	N	Q	A	E
-	N	L	K	R	E	Q	E	F	V	S	Q	Y	H	F	D	A	R	N	F	E	W	E	N	E	N	G	A	P	E	T	K	V	D	V	N	F	Q	L	L	Q	H	D	Q	E	N	Q	V	T	S	L	I	V	I	L	S	F	I	V	F	D	-	-	-	-	-	-	-	K	F	V	I	S	G	T	I	S	Q	V	N	H	I	D	G	R	I	V	N	E	P	S	E	L	N	Q	E	E	V	E	T	L	A	R	P	C	L	N	-	L	N	R	L	T	Y	E	V	T	E	I	A	L	D	L	P	G	I	N	L	E	F	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Member	Chain	UniProtKB	GO term
d1fx3a_	A	P44853	GO:0005737
d1fx3a_	A	P44853	GO:0006457
d1fx3a_	A	P44853	GO:0015031
d1fx3a_	A	P44853	GO:0051082
d1fx3a_	A	P44853	GO:0051262

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-	N	L	K	R	E	Q	E	F	V	S	Q	Y	H	F	D	A	R	N	F	E	W	E	N	E	N	G	A	P	E	T	K	V	D	V	N	F	Q	L	L	Q	H	D	Q	E	N	Q	V	T	S	L	I	V	I	L	S	F	I	V	F	D	-	-	-	-	-	-	-	K	F	V	I	S	G	T	I	S	Q	V	N	H	I	D	G	R	I	V	N	E	P	S	E	L	N	Q	E	E	V	E	T	L	A	R	P	C	L	N	-	L	N	R	L	T	Y	E	V	T	E	I	A	L	D	L	P	G	I	N	L	E	F	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-